Own Data

[Chiara L.]

Hello everyone, 

I was wondering if somebody know if i can upload an own created score into cbioportal to see how for example genes are mutated in my group of positive or not positive Patients based on my score ?

Thanks a lot.

Greets from Dresden,

Chiara

[Priti Kumari]

Hi Chiara,

If you have your own instance of cBioPortal and are able to import studies, you can create your own score and import it as a clinical field. You can then use the group comparison feature. For more information please refer to the tutorial on Group comparison here: https://docs.cbioportal.org/user-guide/overview/

Hope this helps.

Thank you,

Priti

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[Priti Kumari]

Hi Chiara, 

Just wanted to add that you can also add custom data to already existing studies in cBioPortal. You can go to the study view and click on charts -> custom data. You can then add a chart based on a list of patient<>value or sample<>value pairings. It will save to your profile if you are logged in. Please note that this feature only works for categorical data currently.

Thanks,

Priti

[Chiara Löffler]

Thank you a lot. These answers were very helpful!

Am Mittwoch, 7. Dezember 2022 um 20:35:00 MEZ hat Priti Kumari <prit...@gmail.com> Folgendes geschrieben: