cBioPortal user reported error

[Pritam Kumar Ghosh]

Hi,

Please let me know why I'm getting the error. How could I fix it?

https://www.cbioportal.org/results/mutations?cancer_study_list=alal_target_gdc&tab_index=tab_visualize&case_set_id=alal_target_gdc_all&Action=Submit&gene_list=TP53;{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'length')"}

Thanks,

Pritam

PhD student 

Indian Institute of Science

Bengaluru, India

[JJ Gao]

Hi Pritam,

Thanks for reaching out. It looks like this might have been a one-time glitch. Sorry for the inconvenience.

Could you please try refreshing the page or re-submitting the query to see if the error persists?

https://www.cbioportal.org/results/mutations?cancer_study_list=alal_target_gdc&tab_index=tab_visualize&case_set_id=alal_target_gdc_all&Action=Submit&gene_list=TP53

Best regards,

JJ Gao

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[Pritam Kumar Ghosh]

Thank you so much 

Get Outlook for Android

---

From: JJ Gao <jianji...@gmail.com>
Sent: Wednesday, February 11, 2026 4:23:15 AM
To: Pritam Kumar Ghosh <prita...@iisc.ac.in>
Cc: cbiop...@googlegroups.com <cbiop...@googlegroups.com>
Subject: Re: [cbioportal] cBioPortal user reported error

 

External Email

[Loëtitia Favre]

Bonjour,

Je suis utilisatrice de cbioportal et j’ai fréquemment une impossibilité à l’utiliser. Le message d’erreur du jour est affiché ci-dessous.

J’accède à la requête, je choisis « curated set of non redondant Studies ». J’ajoute mes gènes d’intérêt et je lance la recherche. Impossible d’aller plus loin.

Bien cordialement,

Loëtitia Favre


https://www.cbioportal.org/results/oncoprint?tab_index=tab_visualize&Action=Submit&session_id=6996f3361e0070aa094ea46f;{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/ucec_cptac_2020_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED","data":"{\"entrezGeneIds\":[7157,1956,546,5728],\"sampleListId\":\"ucec_cptac_2020_all\"}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/molecular-profiles/ucec_cptac_2020_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED"},"text":"Bad Gateway","statusText":"","statusCode":502,"status":502,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":502,"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/ucec_cptac_2020_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"content-length":"11","date":"Thu, 19 Feb 2026 11:25:47 GMT","content-type":null},"header":{"content-length":"11","date":"Thu, 19 Feb 2026 11:25:47 GMT","content-type":null},"type":"","links":{},"body":null}


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[Arianna Ciocchetti]

https://www.cbioportal.org/results/oncoprint?cancer_study_list=lgg_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Cgistic&case_set_id=lgg_tcga_pan_can_atlas_2018_cnaseq&gene_list=IDH1%2520EGFR&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/clinical-attributes/counts/fetch","data":"{\"sampleListId\":\"lgg_tcga_pan_can_atlas_2018_cnaseq\"}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/clinical-attributes/counts/fetch"},"text":"no available server\n","statusText":"","statusCode":503,"status":503,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":503,"method":"POST","url":"//www.cbioportal.org/api/clinical-attributes/counts/fetch"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"content-length":"20","content-type":"text/plain; charset=utf-8","date":"Thu, 19 Feb 2026 14:21:28 GMT","x-content-type-options":"nosniff"},"header":{"content-length":"20","content-type":"text/plain; charset=utf-8","date":"Thu, 19 Feb 2026 14:21:28 GMT","x-content-type-options":"nosniff"},"type":"text/plain","charset":"utf-8","links":{},"body":null}


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[ole...@thehyve.nl]

Hi Arianna,

Can you try your query again? When I access the link you've reported, I see the Oncoprint without any errors.

Thank you.

Best regards,

Oleguer Plantalech

Data Engineer & Project Manager

E ole...@thehyve.nl

T +31 30 700 9713

W thehyve.nl

    

[Marcela Ramirez]

https://www.cbioportal.org/results?cancer_study_list=all_stjude_2016&tab_index=tab_visualize&case_set_id=all_stjude_2016_all&Action=Submit&gene_list=NRAS;{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute 'removeChild' on 'Node': The node to be removed is not a child of this node."}

[bir...@icloud.com]

{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute 'removeChild' on 'Node': The node to be removed is not a child of this node.","url":"http://www.cbioportal.org/results?cancer_study_list=coadread_tcga_pub&cancer_study_id=coadread_tcga_pub&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=coadread_tcga_pub_mutations&genetic_profile_ids_PROFILE_COPY_NUMBER_ALTERATION=coadread_tcga_pub_gistic&Z_SCORE_THRESHOLD=2.0&case_set_id=coadread_tcga_pub_nonhypermut&gene_list=KRAS%20NRAS%20BRAF&gene_set_choice=user-defined-list"}

[bir...@icloud.com]

{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute 'removeChild' on 'Node': The node to be removed is not a child of this node.","url":"http://www.cbioportal.org/results/coexpression?cancer_study_list=coadread_tcga&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cgistic%2Cmrna_median_Zscores&case_set_id=coadread_tcga_all&gene_list=COL1A2&geneset_list=%20&tab_index=tab_visualize&Action=Submit&plots_horz_selection=%7B%22selectedGeneOption%22%3A1278%2C%22dataType%22%3A%22COPY_NUMBER_ALTERATION%22%2C%22logScale%22%3A%22true%22%7D&plots_vert_selection=%7B%22selectedGeneOption%22%3A-20000%2C%22dataType%22%3A%22MRNA_EXPRESSION%22%2C%22logScale%22%3A%22true%22%2C%22selectedDataSourceOption%22%3A%22rna_seq_v2_mrna%22%7D&plots_coloring_selection=%7B%7D”}

[Gaofei Zhao]

We’ve just deployed a performance improvement for the co-expression feature. Could you please give it another try?

Best,
Gaofei

On Fri, Feb 27, 2026 at 3:53 PM birdll via cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com> wrote:

{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute 'removeChild' on 'Node': The node to be removed is not a child of this node.","url":"http://www.cbioportal.org/results/coexpression?cancer_study_list=coadread_tcga&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cgistic%2Cmrna_median_Zscores&case_set_id=coadread_tcga_all&gene_list=COL1A2&geneset_list=%20&tab_index=tab_visualize&Action=Submit&plots_horz_selection=%7B%22selectedGeneOption%22%3A1278%2C%22dataType%22%3A%22COPY_NUMBER_ALTERATION%22%2C%22logScale%22%3A%22true%22%7D&plots_vert_selection=%7B%22selectedGeneOption%22%3A-20000%2C%22dataType%22%3A%22MRNA_EXPRESSION%22%2C%22logScale%22%3A%22true%22%2C%22selectedDataSourceOption%22%3A%22rna_seq_v2_mrna%22%7D&plots_coloring_selection=%7B%7D”}

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[t.ish...@ltt.co.jp]

https://www.cbioportal.org/results;{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'split')"}

[bir...@icloud.com]

{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute 'removeChild' on 'Node': The node to be removed is not a child of this node.","url":"http://www.cbioportal.org/results/oncoprint?cancer_study_list=coadread_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Cgistic&case_set_id=coadread_tcga_pan_can_atlas_2018_cnaseq&gene_list=COL1A2&geneset_list=%20&tab_index=tab_visualize&Action=Submit"}

[高橋美湖]

https://www.cbioportal.org/results/oncoprint?cancer_study_list=acyc_fmi_2014%2Cacyc_jhu_2016%2Cacyc_mda_2015%2Cacyc_mgh_2016%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Cacc_2019%2Cohnca_cptac_gdc%2Chnsc_broad%2Chnsc_jhu%2Chnsc_tcga_gdc%2Chnsc_tcga%2Chnsc_tcga_pub%2Chnsc_tcga_pan_can_atlas_2018%2Chnsc_a5consortium_2025%2Cnpc_nusingapore%2Chnsc_mdanderson_2013%2Chnc_mskcc_2016&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna%2Cgistic&case_set_id=all&gene_list=ALDH1A1&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"type":"ErrorBoundary","log":"NotFoundError: Failed to execute 'removeChild' on 'Node': The node to be removed is not a child of this node."}