Hello!
Specimen
Surgery
Status
Diagnostics
Diagnostic
Imaging
Lab_test
Treatment
First custom event
etc.
Currently the diagnoses are last however. Any help is appreciated. Thanks, Aaron.
The meta file is:
cancer_study_identifier: REDACTED
data_filename: DIAGNOSIS.txt
datatype: TIMELINE
genetic_alteration_type: CLINICAL
The header and first row for the DIAGNOSIS.txt are:
PATIENT_ID START_DATE STOP_DATE EVENT_TYPE ICD-O SITE CODE ICD-O SITE ICD-O HISTO CODE ICD-O HISTOLOGY GENERAL STAGE T N M STAGE STAGED FROM STAGE SEER SYSTEM TUMOR SIZE # REG NODES EXAMINED # POS REG NODES METS AT DX? METS AT DX DESC (IF KNOWN) HEIGHT AT DX (CM) DAYS FROM DX TO HEIGHT WEIGHT AT DX (KG) DAYS FROM DX TO WEIGHT BMI AT DX RECUR TYPE
EXAMPLE_ID 20352 Diagnosis C50.4 Breast, upper-outer quadrant 8520/3 Lobular carcinoma, NOS (C50._) Stage II 2 0 X 2A Path 35 2 0 N 170 6 72.7 6 25.1557