Error - Query by Gene

[Wilhelm, Kevin]

Hello,

 

I am trying to query the cBioPortal by gene to observe mutations in some genes of interest. I was able to query by gene earlier using the “MSK-IMPACT”, “Cancer Therapy and Clonal Hematopoiesis”, “China Pan-cancer”, and “MSK MetTropism” PanCancer studies, but when I tried to use the “Curated set of non-redundant studies” for my query, I receive the following error:

 

{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'destroy')","url":https://www.cbioportal.org/}

 

Please let me know if there is anything that I can do to fix this error.

 

Best,

 

Kevin Wilhelm

 

 

Kevin Wilhelm

Ph.D. Candidate

Lichtarge Lab

Baylor College of Medicine

Houston, Texas

Kevin....@bcm.edu

 

[Benjamin Gross]

Hi Kevin,

I’m not able to recreated this issue.  Can you send me a URL to the query you are performing?

Best,

Benjamin

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[Benjamin Gross]

Hi Kevin,

As discussed in separate/offline email, URLs appear to load correctly in Safari (at least) but not in Chrome.  I’ve created an issue on your behalf for frontend engineers to look at:

https://github.com/cBioPortal/cbioportal/issues/10273

Best,

-Benjamin

On Jul 11, 2023, at 6:16 PM, Wilhelm, Kevin <Kevin....@bcm.edu> wrote:

Hello,

 

Here is the URL to the query:

https://www.cbioportal.org/results/oncoprint?tab_index=tab_visualize&Action=Submit&session_id=64add4568365b77693579340

 

https://www.cbioportal.org/results/oncoprint?cancer_study_list=msk_impact_2017%2Cmsk_ch_2020%2Cpan_origimed_2020%2Cmsk_met_2021&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna&case_set_id=all&gene_list=PDGFRB&geneset_list=%20&tab_index=tab_visualize&Action=Submit

 

Please let me know if these URLs are not what you are looking for.

 

Kevin

 

From: Benjamin Gross <benjami...@gmail.com>
Date: Tuesday, July 11, 2023 at 4:19 PM
To: Wilhelm, Kevin <Kevin....@bcm.edu>
Cc: cbiop...@googlegroups.com <cbiop...@googlegroups.com>
Subject: Re: [cbioportal] Error - Query by Gene

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[Wilhelm, Kevin]

Hi Benjamin,

 

Thank you for creating this issue (didn’t know you had a GitHub repo for this). You have been very helpful.

 

Best,

 

Kevin Wilhelm