Understanding normal and diseased TCGA Id's

[Rasika Pawar]

Hello,

How can we differentiate between normal and diseased TCGA ids in Pancreatic Adenocarcinoma (TCGA, Firehose Legacy) (cbioportal)- RNA expression data, as I need it to calculate log fold change value based on a normal and diseased sample.

Kindly help

[mohammed imran Khan]

See this link to figure out the TCGA barcode. 

https://docs.gdc.cancer.gov/Encyclopedia/pages/TCGA_Barcode/

Best regards--
Mohammed Imran Khan, PhD

imrankha...@gmail.com

mkha...@uwo.ca

Postdoctoral Associate (PDA)

Department of Otolaryngology-Head & Neck Surgery,

Western University, London, ON, Canada

https://www.researchgate.net/profile/Mohammed_Khan41

https://scholar.google.com/citations?hl=en&user=K3hnREYAAAAJ

--
You received this message because you are subscribed to the Google Groups "cBioPortal for Cancer Genomics Discussion Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cbioportal+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cbioportal/180d3aa0-de6b-433b-a3a8-ec9cddd79da6n%40googlegroups.com.

[Tali Mazor]

Hi Rasika,

cBioPortal only has mRNA expression data from tumor samples -- see our FAQ here: https://www.cbioportal.org/faq#is-there-any-normal-rna-seq-data-in-cbioportal

If you want mRNA expression from normal samples, you can get that from the Genomic Data Commons: https://gdc.cancer.gov/about-data/publications/pancanatlas

-Tali

To view this discussion on the web visit https://groups.google.com/d/msgid/cbioportal/CAAx6sh_sMOvehFvspdo2yeEGKQsgP-1n%2BAGcqSYerVBOKHuSjA%40mail.gmail.com.

[Rasika Pawar]

Thank you Mohammed Imran Khan and Tali