cBioPortal user reported error
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Lila Taylor
Jul 25, 2025, 11:10:04 AMJul 25
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Below is reported error, getting message that resource is forbidden.
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https://genie.cbioportal.org/study/summary?id=genie_private;{"req":{"method":"POST","url":"//genie.cbioportal.org/api/treatments/display-sample","data":"[\"genie_private\"]","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//genie.cbioportal.org/api/treatments/display-sample"},"text":"{\"message\":\"Access to the specified resource has been forbidden\"}","statusText":"","statusCode":403,"status":403,"statusType":4,"info":false,"ok":false,"redirect":false,"clientError":true,"serverError":false,"error":{"status":403,"method":"POST","url":"//genie.cbioportal.org/api/treatments/display-sample"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":true,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"65","content-type":"application/json","date":"Thu, 17 Jul 2025 16:03:07 GMT","elapsed-time":"1","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"65","content-type":"application/json","date":"Thu, 17 Jul 2025 16:03:07 GMT","elapsed-time":"1","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"Access to the specified resource has been forbidden"}}
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Syirah Jamal
Jul 25, 2025, 11:11:56 AMJul 25
to cbiop...@googlegroups.com
https://www.cbioportal.org/study/plots?id=mbc_msk_2021;{"req":{"method":"GET","url":"//www.cbioportal.org/api/genes?projection=SUMMARY","headers":{"accept":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/genes?projection=SUMMARY","url":"//www.cbioportal.org/api/genes?projection=SUMMARY"},"text":"<html>\r\n<head><title>503
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Thane Natarajan
Jul 25, 2025, 11:12:48 AMJul 25
to cbiop...@googlegroups.com
https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=CDH1%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'length')"}
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Alexander Azizi
Jul 25, 2025, 11:13:45 AMJul 25
to cbiop...@googlegroups.com
Dear Team,
I cannot access the data from https://aacrjournals.org/cancerdiscovery/article/13/5/1116/726168/Integrative-Pan-Cancer-Genomic-and-Transcriptomic at https://cbioportal.gustaveroussy.fr/study/summary?id=metaprism_2023.
It
gives the error below.
Sincerely,
Alex
The Francis Crick Institute Limited is a registered charity in England and Wales no. 1140062 and a company registered in England and Wales no. 06885462, with its registered office at 1 Midland Road London NW1 1AT
Aaron L
Jul 25, 2025, 11:15:00 AMJul 25
to Lila Taylor, cbiop...@googlegroups.com
Hi Lila, thanks for the report. There was brief problem where internal studies were listed on the homepage. I believe that's what you were seeing. It's fixed now.
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Aaron L
Jul 25, 2025, 1:28:04 PMJul 25
to Alexander Azizi, cbiop...@googlegroups.com
Hi Alexander,
Thanks for the report. You should contact the maintainer of this instance (https://cbioportal.gustaveroussy.fr) and alert them. This is the core team and we only support the public instances of cBioportal.
--Aaron
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Thane Natarajan
Jul 28, 2025, 12:33:01 PMJul 28
to cbiop...@googlegroups.com
https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=ASXL2%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/crc_nigerian_2020_cna/discrete-copy-number/fetch?discreteCopyNumberEvent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Thane Natarajan
Jul 28, 2025, 12:40:10 PMJul 28
to cbiop...@googlegroups.com
On QuickSearch site, to check mutations in any gene, nothing comes up.
Even before completing the gene name this comes up:
“
Oops. There was an error retrieving data.
Please correct it.
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Secured by Paubox - HITRUST certifiedThane Natarajan
Jul 28, 2025, 12:40:53 PMJul 28
to cbiop...@googlegroups.com
https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=ASXL2%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/histiocytosis_cobi_msk_2019_cna/discrete-copy-number/fetch?discreteCopyN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Thane Natarajan
Jul 28, 2025, 2:05:43 PMJul 28
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https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=NOTCH3%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED","data":"{\"sampleListIds\":[\"acbc_mskcc_2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Thane Natarajan
Jul 28, 2025, 2:05:48 PMJul 28
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Thane Natarajan
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https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=POLE%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED","data":"{\"sampleListIds\":[\"acbc_mskcc_201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Thane Natarajan
Jul 28, 2025, 2:31:24 PMJul 28
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https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=SLX4%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED","data":"{\"sampleListIds\":[\"acbc_mskcc_201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Thane Natarajan
Jul 28, 2025, 2:36:22 PMJul 28
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https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=SPEN%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED","data":"{\"sampleListIds\":[\"acbc_mskcc_201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Thane Natarajan
Jul 28, 2025, 2:51:52 PMJul 28
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https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=TOP2A%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cmsk_impact_2017%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED","data":"{\"sampleListIds\":[\"acbc_mskcc_20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Ahmad Abboud
Jul 28, 2025, 4:27:52 PMJul 28
to cbiop...@googlegroups.com
https://www.cbioportal.org/patient?sampleId=TCGA-A2-A0SW-01&studyId=brca_tcga_pan_can_atlas_2018;{"req":{"method":"GET","url":"//www.cbioportal.org/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01","headers":{"accept":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01"},"text":"{\"timestamp\":1753726069639,\"status\":500,\"error\":\"Internal Server Error\",\"path\":\"/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"GET","url":"//www.cbioportal.org/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-encoding":"gzip","content-type":"application/json","date":"Mon, 28 Jul 2025 18:07:49 GMT","elapsed-time":"0","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"origin,access-control-request-method,access-control-request-headers,accept-encoding","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-encoding":"gzip","content-type":"application/json","date":"Mon, 28 Jul 2025 18:07:49 GMT","elapsed-time":"0","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"origin,access-control-request-method,access-control-request-headers,accept-encoding","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"timestamp":1753726069639,"status":500,"error":"Internal Server Error","path":"/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01"}}
Andy Jia
Jul 28, 2025, 4:27:53 PMJul 28
to cBioPortal for Cancer Genomics Discussion Group
Error with accessing TCGA Pancancer atlas for prostate adenocarcinoma
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Woogwang Sim
Jul 28, 2025, 4:27:53 PMJul 28
to cbiop...@googlegroups.com
Dear cBioportal Teams,
Thank you for developing and maintaining the database. Recently, I got the following error, through clicking the “Prostate Adenocarcinoma (TCGA, PanCAncer Atlas).
Hopefully, it will be solved soon.
Best regards,
Woogwang, Ph.D.
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Thank you for developing and maintaining the database. Recently, I got the following error, through clicking the “Prostate Adenocarcinoma (TCGA, PanCAncer Atlas).
Hopefully, it will be solved soon.
Best regards,
Woogwang, Ph.D.
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Nneoma Queendalyn
Jul 28, 2025, 4:27:53 PMJul 28
to cbiop...@googlegroups.com
Good day.
Please am getting this error message. What can I do?https://www.cbioportal.org/results/oncoprint?cancer_study_list=brca_metabric&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Ccna%2Cmrna_median_all_sample_Zscores&case_set_id=brca_metabric_3way_complete&gene_list=MKI67&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/sample-lists/fetch","data":"[\"brca_metabric_3way_complete\"]","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/sample-lists/fetch"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/sample-lists/fetch"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:48:22 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:48:22 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
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Nneoma
Please am getting this error message. What can I do?https://www.cbioportal.org/results/oncoprint?cancer_study_list=brca_metabric&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Ccna%2Cmrna_median_all_sample_Zscores&case_set_id=brca_metabric_3way_complete&gene_list=MKI67&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/sample-lists/fetch","data":"[\"brca_metabric_3way_complete\"]","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/sample-lists/fetch"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/sample-lists/fetch"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:48:22 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:48:22 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
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Nneoma
Chris Sander
Jul 28, 2025, 4:27:53 PMJul 28
to cbiop...@googlegroups.com
…. for several query by gene requests …
Peter K. Jackson
Jul 28, 2025, 4:27:53 PMJul 28
to cbiop...@googlegroups.com
HI
I am having this problem. Not sure why. I have done 1000s of searches. Do I just need to restrict my number of samples? I tried that but enen using the TCGA set I could not query one gene
thanks
Peter K. Jackson, Ph. D., Professor
Baxter Laboratory for Stem Cell Biology
Departments of Microbiology & Immunology and Pathology
Stanford University School of Medicine
269 Campus Drive. CCSR 3205b
Stanford, CA 94305-5175
650-723-6483 (Office)
650-302-3581 (Cell)
pjac...@stanford.edu
https://www.cbioportal.org/results/oncoprint?cancer_study_list=laml_tcga_pan_can_atlas_2018%2Cacc_tcga_pan_can_atlas_2018%2Cblca_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018%2Cbrca_tcga_pan_can_atlas_2018%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018%2Cdlbc_tcga_pan_can_atlas_2018%2Cesca_tcga_pan_can_atlas_2018%2Cgbm_tcga_pan_can_atlas_2018%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Clihc_tcga_pan_can_atlas_2018%2Cluad_tcga_pan_can_atlas_2018%2Clusc_tcga_pan_can_atlas_2018%2Cmeso_tcga_pan_can_atlas_2018%2Cov_tcga_pan_can_atlas_2018%2Cpaad_tcga_pan_can_atlas_2018%2Cpcpg_tcga_pan_can_atlas_2018%2Cprad_tcga_pan_can_atlas_2018%2Csarc_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018%2Cstad_tcga_pan_can_atlas_2018%2Ctgct_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cucs_tcga_pan_can_atlas_2018%2Cucec_tcga_pan_can_atlas_2018%2Cuvm_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Cgistic&case_set_id=all&gene_list=FGFBP1&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/acc_tcga_pan_can_atlas_2018_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED","data":"{\"entrezGeneIds\":[9982],\"sampleListId\":\"acc_tcga_pan_can_atlas_2018_all\"}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/molecular-profiles/acc_tcga_pan_can_atlas_2018_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/acc_tcga_pan_can_atlas_2018_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:53:20 GMT","elapsed-time":"9","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-firefox-spdy":"h2","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:53:20 GMT","elapsed-time":"9","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-firefox-spdy":"h2","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
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I am having this problem. Not sure why. I have done 1000s of searches. Do I just need to restrict my number of samples? I tried that but enen using the TCGA set I could not query one gene
thanks
Peter K. Jackson, Ph. D., Professor
Baxter Laboratory for Stem Cell Biology
Departments of Microbiology & Immunology and Pathology
Stanford University School of Medicine
269 Campus Drive. CCSR 3205b
Stanford, CA 94305-5175
650-723-6483 (Office)
650-302-3581 (Cell)
pjac...@stanford.edu
https://www.cbioportal.org/results/oncoprint?cancer_study_list=laml_tcga_pan_can_atlas_2018%2Cacc_tcga_pan_can_atlas_2018%2Cblca_tcga_pan_can_atlas_2018%2Clgg_tcga_pan_can_atlas_2018%2Cbrca_tcga_pan_can_atlas_2018%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_tcga_pan_can_atlas_2018%2Ccoadread_tcga_pan_can_atlas_2018%2Cdlbc_tcga_pan_can_atlas_2018%2Cesca_tcga_pan_can_atlas_2018%2Cgbm_tcga_pan_can_atlas_2018%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Clihc_tcga_pan_can_atlas_2018%2Cluad_tcga_pan_can_atlas_2018%2Clusc_tcga_pan_can_atlas_2018%2Cmeso_tcga_pan_can_atlas_2018%2Cov_tcga_pan_can_atlas_2018%2Cpaad_tcga_pan_can_atlas_2018%2Cpcpg_tcga_pan_can_atlas_2018%2Cprad_tcga_pan_can_atlas_2018%2Csarc_tcga_pan_can_atlas_2018%2Cskcm_tcga_pan_can_atlas_2018%2Cstad_tcga_pan_can_atlas_2018%2Ctgct_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cucs_tcga_pan_can_atlas_2018%2Cucec_tcga_pan_can_atlas_2018%2Cuvm_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Cgistic&case_set_id=all&gene_list=FGFBP1&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/acc_tcga_pan_can_atlas_2018_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED","data":"{\"entrezGeneIds\":[9982],\"sampleListId\":\"acc_tcga_pan_can_atlas_2018_all\"}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/molecular-profiles/acc_tcga_pan_can_atlas_2018_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/acc_tcga_pan_can_atlas_2018_gistic/discrete-copy-number/fetch?discreteCopyNumberEventType=HOMDEL_AND_AMP&projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:53:20 GMT","elapsed-time":"9","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-firefox-spdy":"h2","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 16:53:20 GMT","elapsed-time":"9","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-firefox-spdy":"h2","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
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Lila Taylor
Jul 28, 2025, 4:27:53 PMJul 28
to cbiop...@googlegroups.com
Query for PTEN in TCGA PanCancer Atlas, Invasive Breast Carcinoma only.
https://www.cbioportal.org/results/oncoprint?cancer_study_list=brca_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Cgistic&case_set_id=brca_tcga_pan_can_atlas_2018_cnaseq&gene_list=PTEN&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/mutations/fetch?projection=DETAILED","data":"{\"entrezGeneIds\":[5728],\"molecularProfileIds\":[\"brca_tcga_pan_can_atlas_2018_mutations\"]}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/mutations/fetch?projection=DETAILED"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/mutations/fetch?projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-data/fetch?projection=DETAILED","data":"{\"entrezGeneIds\":[5728],\"molecularProfileIds\":[\"brca_tcga_pan_can_atlas_2018_gistic\"]}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/molecular-data/fetch?projection=DETAILED"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/molecular-data/fetch?projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"16","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"16","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
https://www.cbioportal.org/results/oncoprint?cancer_study_list=brca_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Cgistic&case_set_id=brca_tcga_pan_can_atlas_2018_cnaseq&gene_list=PTEN&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/mutations/fetch?projection=DETAILED","data":"{\"entrezGeneIds\":[5728],\"molecularProfileIds\":[\"brca_tcga_pan_can_atlas_2018_mutations\"]}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/mutations/fetch?projection=DETAILED"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/mutations/fetch?projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"6","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-data/fetch?projection=DETAILED","data":"{\"entrezGeneIds\":[5728],\"molecularProfileIds\":[\"brca_tcga_pan_can_atlas_2018_gistic\"]}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/molecular-data/fetch?projection=DETAILED"},"text":"{\"message\":\"SQL exception. If you are a maintainer of this instance, see logs for details.\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/molecular-data/fetch?projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"16","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-length":"92","content-type":"application/json","date":"Mon, 28 Jul 2025 17:18:01 GMT","elapsed-time":"16","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"Origin, Access-Control-Request-Method, Access-Control-Request-Headers","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"message":"SQL exception. If you are a maintainer of this instance, see logs for details."}}
Quinn Hauck
Jul 28, 2025, 4:27:53 PMJul 28
to cBioPortal for Cancer Genomics Discussion Group
Can confirm I am also experiencing this error in the Quick Search tab.
JJ Gao
Jul 28, 2025, 4:40:46 PMJul 28
to Nneoma Queendalyn, cbiop...@googlegroups.com
Hi Nneoma,
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
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JJ Gao
Jul 28, 2025, 4:42:02 PMJul 28
to Thane Natarajan, cbiop...@googlegroups.com
Hi Thane,
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
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To view this discussion visit https://groups.google.com/d/msgid/cbioportal/A4E3E6E8-8097-425E-B829-5A00D97A9157%40genomoncology.com.
JJ Gao
Jul 28, 2025, 4:42:19 PMJul 28
to Quinn Hauck, cBioPortal for Cancer Genomics Discussion Group
Hi Quinn,
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
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JJ Gao
Jul 28, 2025, 4:43:17 PMJul 28
to Andy Jia, cBioPortal for Cancer Genomics Discussion Group
Hi Andy,
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
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JJ Gao
Jul 28, 2025, 4:44:48 PMJul 28
to Lila Taylor, cbiop...@googlegroups.com
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
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JJ Gao
Jul 28, 2025, 4:45:51 PMJul 28
to Chris Sander, cbiop...@googlegroups.com
Hey Chris,
We had some technical issue. It has been fixed. We are looking into the cause now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Thanks,
-JJ
On Mon, Jul 28, 2025 at 4:27 PM Chris Sander <ch...@sanderlab.org> wrote:
…. for several query by gene requests …https://www.cbioportal.org/results/oncoprint?cancer_study_list=msk_chord_2024&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna&case_set_id=msk_chord_2024_cnaseq&gene_list=EGFR&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"req":{"method":"POST","url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED","data":"{\"sampleListIds\":[\"msk_chord_2024_cnaseq\"]}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED"},"text":"{\"timestamp\":1753728544718,\"status\":500,\"error\":\"Internal Server Error\",\"path\":\"/api/column-store/samples/fetch\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"POST","url":"//www.cbioportal.org/api/column-store/samples/fetch?projection=DETAILED"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-encoding":"gzip","content-type":"application/json","date":"Mon, 28 Jul 2025 18:49:04 GMT","elapsed-time":"0","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"origin,access-control-request-method,access-control-request-headers,accept-encoding","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-encoding":"gzip","content-type":"application/json","date":"Mon, 28 Jul 2025 18:49:04 GMT","elapsed-time":"0","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"origin,access-control-request-method,access-control-request-headers,accept-encoding","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"timestamp":1753728544718,"status":500,"error":"Internal Server Error","path":"/api/column-store/samples/fetch"}}
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JJ Gao
Jul 28, 2025, 4:47:50 PMJul 28
to Woogwang Sim, cbiop...@googlegroups.com
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
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JJ Gao
Jul 28, 2025, 4:49:33 PMJul 28
to Peter K. Jackson, cbiop...@googlegroups.com
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
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JJ Gao
Jul 28, 2025, 4:49:44 PMJul 28
to Ahmad Abboud, cbiop...@googlegroups.com
Thank you for reporting this to us. We have experienced some website issue today and it has been fixed now.
Sorry for the inconvenience. Please try again and let us know if the problem persists.
Best,
-JJ
On Mon, Jul 28, 2025 at 4:27 PM 'Ahmad Abboud' via cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com> wrote:
https://www.cbioportal.org/patient?sampleId=TCGA-A2-A0SW-01&studyId=brca_tcga_pan_can_atlas_2018;{"req":{"method":"GET","url":"//www.cbioportal.org/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01","headers":{"accept":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01"},"text":"{\"timestamp\":1753726069639,\"status\":500,\"error\":\"Internal Server Error\",\"path\":\"/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01\"}","statusText":"","statusCode":500,"status":500,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":500,"method":"GET","url":"//www.cbioportal.org/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-encoding":"gzip","content-type":"application/json","date":"Mon, 28 Jul 2025 18:07:49 GMT","elapsed-time":"0","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"origin,access-control-request-method,access-control-request-headers,accept-encoding","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"header":{"cache-control":"no-cache, no-store, max-age=0, must-revalidate","content-encoding":"gzip","content-type":"application/json","date":"Mon, 28 Jul 2025 18:07:49 GMT","elapsed-time":"0","expires":"0","pragma":"no-cache","strict-transport-security":"max-age=31536000; includeSubDomains","vary":"origin,access-control-request-method,access-control-request-headers,accept-encoding","x-content-type-options":"nosniff","x-frame-options":"DENY","x-xss-protection":"0"},"type":"application/json","links":{},"body":{"timestamp":1753726069639,"status":500,"error":"Internal Server Error","path":"/api/column-store/studies/brca_tcga_pan_can_atlas_2018/samples/TCGA-A2-A0SW-01"}}
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Peter K. Jackson
Jul 29, 2025, 4:32:17 AMJul 29
to JJ Gao, cbiop...@googlegroups.com
Thanks JJ. Works perfectly now.
Appreciate the quick response and quick fix
Peter
Thane Natarajan
Aug 7, 2025, 8:16:37 PMAug 7
to cbiop...@googlegroups.com
https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=CDKN2C%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/molecular-profiles/fetch","data":"{\"studyIds\":[\"acbc_mskcc_2015\",\"acc_tcga_pan_can_atlas_2018\",\"acyc_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Thane Natarajan
Aug 7, 2025, 8:17:51 PMAug 7
to cbiop...@googlegroups.com
https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=CDKN2C%3AMUT&cancer_study_list=acbc_mskcc_2015%2Cacc_tcga_pan_can_atlas_2018%2Cacyc_fmi_2014%2Cacyc_mda_2015%2Cacyc_mskcc_2013%2Cacyc_sanger_2013%2Call_phase2_target_2018_pub%2Call_stjude_2016%2Caml_target_2018_pub%2Campca_bcm_2016%2Cangs_project_painter_2018%2Cbfn_duke_nus_2015%2Cblca_bgi%2Cblca_cornell_2016%2Cblca_dfarber_mskcc_2014%2Cblca_mskcc_solit_2012%2Cblca_mskcc_solit_2014%2Cblca_tcga_pan_can_atlas_2018%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_igr_2015%2Cbrca_mbcproject_wagle_2017%2Cbrca_metabric%2Cbrca_sanger%2Cbrca_tcga_pan_can_atlas_2018%2Cccrcc_irc_2014%2Cccrcc_utokyo_2013%2Ccesc_tcga_pan_can_atlas_2018%2Cchol_jhu_2013%2Cchol_nccs_2013%2Cchol_nus_2012%2Cchol_tcga_pan_can_atlas_2018%2Ccll_iuopa_2015%2Ccllsll_icgc_2011%2Ccoadread_dfci_2016%2Ccoadread_genentech%2Ccoadread_mskcc%2Ccoadread_tcga_pan_can_atlas_2018%2Ccscc_dfarber_2015%2Ccscc_hgsc_bcm_2014%2Cctcl_columbia_2015%2Cdesm_broad_2015%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbcl_dfci_2018%2Cdlbcl_duke_2017%2Cegc_tmucih_2015%2Ces_dfarber_broad_2014%2Ces_iocurie_2014%2Cesca_broad%2Cesca_tcga_pan_can_atlas_2018%2Cescc_icgc%2Cescc_ucla_2014%2Cgbc_shanghai_2014%2Cgbm_tcga_pan_can_atlas_2018%2Cglioma_msk_2018%2Chcc_inserm_fr_2015%2Chcc_msk_venturaa_2018%2Chnsc_broad%2Chnsc_jhu%2Chnsc_mdanderson_2013%2Chnsc_tcga_pan_can_atlas_2018%2Ckich_tcga_pan_can_atlas_2018%2Ckirc_bgi%2Ckirc_tcga_pan_can_atlas_2018%2Ckirp_tcga_pan_can_atlas_2018%2Claml_tcga_pan_can_atlas_2018%2Clcll_broad_2013%2Clgg_tcga_pan_can_atlas_2018%2Clgg_ucsf_2014%2Cliad_inserm_fr_2014%2Clihc_amc_prv%2Clihc_riken%2Clihc_tcga_pan_can_atlas_2018%2Cluad_broad%2Cluad_tcga_pan_can_atlas_2018%2Cluad_tsp%2Clusc_tcga_pan_can_atlas_2018%2Cmbl_broad_2012%2Cmbl_pcgp%2Cmbl_sickkids_2016%2Cmcl_idibips_2013%2Cmds_tokyo_2011%2Cmel_tsam_liang_2017%2Cmeso_tcga_pan_can_atlas_2018%2Cmixed_allen_2018%2Cmixed_pipseq_2017%2Cmm_broad%2Cmpnst_mskcc%2Cmrt_bcgsc_2016%2Cnbl_amc_2012%2Cnbl_target_2018_pub%2Cnbl_ucologne_2015%2Cnccrcc_genentech_2014%2Cnepc_wcm_2016%2Cnhl_bcgsc_2011%2Cnhl_bcgsc_2013%2Cnpc_nusingapore%2Cnsclc_unito_2016%2Cov_tcga_pan_can_atlas_2018%2Cpaac_jhu_2014%2Cpaad_qcmg_uq_2016%2Cpaad_tcga_pan_can_atlas_2018%2Cpaad_utsw_2015%2Cpact_jhu_2011%2Cpanet_arcnet_2017%2Cpanet_jhu_2011%2Cpanet_shanghai_2013%2Cpcnsl_mayo_2015%2Cpcpg_tcga_pan_can_atlas_2018%2Cpediatric_dkfz_2017%2Cplmeso_nyu_2015%2Cprad_broad%2Cprad_eururol_2017%2Cprad_fhcrc%2Cprad_mich%2Cprad_mskcc%2Cprad_mskcc_cheny1_organoids_2014%2Cprad_tcga_pan_can_atlas_2018%2Crms_nih_2014%2Crt_target_2018_pub%2Csarc_mskcc%2Csarc_tcga_pan_can_atlas_2018%2Cscco_mskcc%2Csclc_cancercell_gardner_2017%2Csclc_jhu%2Csclc_ucologne_2015%2Cskcm_broad%2Cskcm_broad_brafresist_2012%2Cskcm_tcga_pan_can_atlas_2018%2Cskcm_vanderbilt_mskcc_2015%2Cskcm_yale%2Cstad_pfizer_uhongkong%2Cstad_tcga_pan_can_atlas_2018%2Cstad_utokyo%2Csummit_2018%2Ctet_nci_2014%2Ctgct_tcga_pan_can_atlas_2018%2Cthca_tcga_pan_can_atlas_2018%2Cthym_tcga_pan_can_atlas_2018%2Cuccc_nih_2017%2Cucec_tcga_pan_can_atlas_2018%2Cucs_jhu_2014%2Cucs_tcga_pan_can_atlas_2018%2Cum_qimr_2016%2Curcc_mskcc_2016%2Cutuc_mskcc_2015%2Cuvm_tcga_pan_can_atlas_2018%2Cvsc_cuk_2018%2Cwt_target_2018_pub%2Cacyc_jhu_2016%2Cprostate_dkfz_2018%2Chistiocytosis_cobi_msk_2019%2Cutuc_cornell_baylor_mdacc_2019%2Cprad_su2c_2019%2Ccll_broad_2015%2Ccoad_cptac_2019%2Cbrca_mskcc_2019%2Cacc_2019%2Cpptc_2019%2Cprad_msk_2019%2Cccrcc_dfci_2019%2Cmpn_cimr_2013%2Cnsclc_tracerx_2017%2Cmnm_washu_2016%2Cbcc_unige_2016%2Ccoad_caseccc_2015%2Cmetastatic_solid_tumors_mich_2017%2Caml_ohsu_2018%2Cihch_smmu_2014%2Cnsclc_mskcc_2018%2Cskcm_dfci_2015%2Cskcm_mskcc_2014%2Cmel_ucla_2016%2Cutuc_msk_2019%2Cgbm_columbia_2019%2Cstad_oncosg_2018%2Cbrca_smc_2018%2Cluad_oncosg_2020%2Cangs_painter_2020%2Cmel_dfci_2019%2Clung_smc_2016%2Cutuc_igbmc_2021%2Ccscc_ucsf_2021%2Cchol_icgc_2017%2Chccihch_pku_2019%2Cihch_ismms_2015%2Cmbl_dkfz_2017%2Cpan_origimed_2020%2Ccrc_nigerian_2020%2Cdifg_glass_2019%2Cpancan_pcawg_2020%2Cucec_cptac_2020%2Cpaad_cptac_2021%2Clusc_cptac_2021%2Cluad_cptac_2020%2Cgbm_cptac_2021%2Cbrca_cptac_2020%2Cbrain_cptac_2020%2Cmpcproject_broad_2021%2Cbrca_hta9_htan_2022%2Clung_nci_2022%2Cmds_iwg_2022%2Cbiliary_tract_summit_2022%2Cpog570_bcgsc_2020%2Chcc_meric_2021%2Cprostate_pcbm_swiss_2019%2Cucec_ccr_cfdna_msk_2022%2Cucec_ccr_msk_2022%2Cmixed_selpercatinib_2020%2Clgsoc_mapk_msk_2022%2Cmng_utoronto_2021%2Cblca_bcan_hcrn_2022%2Caml_ohsu_2022%2Ccoad_silu_2022%2Cstmyec_wcm_2022%2Cbladder_columbia_msk_2018%2Csarcoma_msk_2022%2Ccll_broad_2022%2Ccoadread_cass_2020%2Cprad_msk_mdanderson_2023%2Ccrc_hta11_htan_2021%2Chcc_clca_2024%2Cbrca_fuscc_2020%2Cbrca_dfci_2020%2Cmsk_chord_2024%2Cchl_sccc_2023%2Cnormal_skin_fibroblast_2024%2Cnormal_skin_keratinocytes_2024%2Cnormal_skin_melanocytes_2024%2Covary_geomx_gray_foundation_2024%2Csarcoma_ucla_2024;{"req":{"method":"POST","url":"//www.cbioportal.org/api/studies/fetch?projection=DETAILED","data":"[\"acbc_mskcc_2015\",\"acc_tcga_pan_can_atlas_2018\",\"acyc_fmi_2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de Bruijn, Ino
Aug 7, 2025, 11:25:53 PMAug 7
to Thane Natarajan, cbiop...@googlegroups.com
Hi Thane,
Thanks for letting us know! We had some server outage– should be working now, let us know if you run into any other issues
Thanks!
Ino
From:
cbiop...@googlegroups.com <cbiop...@googlegroups.com> on behalf of Thane Natarajan <tnata...@genomoncology.com>
Date: Thursday, August 7, 2025 at 8:18 PM
To: cbiop...@googlegroups.com <cbiop...@googlegroups.com>
Subject: [EXTERNAL] [cbioportal] cBioPortal user reported error
https: //urldefense. com/v3/__https: //www. cbioportal. org/results/mutations?case_set_id=all&gene_list=CDKN2C*3AMUT&cancer_study_list=acbc_mskcc_2015*2Cacc_tcga_pan_can_atlas_2018*2Cacyc_fmi_2014*2Cacyc_mda_2015*2Cacyc_mskcc_2013*2Cacyc_sanger_2013*2Call_phase2_target_2018_pub*2Call_stjude_2016*2Caml_target_2018_pub*2Campca_bcm_2016*2Cangs_project_painter_2018*2Cbfn_duke_nus_2015*2Cblca_bgi*2Cblca_cornell_2016*2Cblca_dfarber_mskcc_2014*2Cblca_mskcc_solit_2012*2Cblca_mskcc_solit_2014*2Cblca_tcga_pan_can_atlas_2018*2Cbrca_bccrc*2Cbrca_broad*2Cbrca_igr_2015*2Cbrca_mbcproject_wagle_2017*2Cbrca_metabric*2Cbrca_sanger*2Cbrca_tcga_pan_can_atlas_2018*2Cccrcc_irc_2014*2Cccrcc_utokyo_2013*2Ccesc_tcga_pan_can_atlas_2018*2Cchol_jhu_2013*2Cchol_nccs_2013*2Cchol_nus_2012*2Cchol_tcga_pan_can_atlas_2018*2Ccll_iuopa_2015*2Ccllsll_icgc_2011*2Ccoadread_dfci_2016*2Ccoadread_genentech*2Ccoadread_mskcc*2Ccoadread_tcga_pan_can_atlas_2018*2Ccscc_dfarber_2015*2Ccscc_hgsc_bcm_2014*2Cctcl_columbia_2015*2Cdesm_broad_2015*2Cdlbc_tcga_pan_can_atlas_2018*2Cdlbcl_dfci_2018*2Cdlbcl_duke_2017*2Cegc_tmucih_2015*2Ces_dfarber_broad_2014*2Ces_iocurie_2014*2Cesca_broad*2Cesca_tcga_pan_can_atlas_2018*2Cescc_icgc*2Cescc_ucla_2014*2Cgbc_shanghai_2014*2Cgbm_tcga_pan_can_atlas_2018*2Cglioma_msk_2018*2Chcc_inserm_fr_2015*2Chcc_msk_venturaa_2018*2Chnsc_broad*2Chnsc_jhu*2Chnsc_mdanderson_2013*2Chnsc_tcga_pan_can_atlas_2018*2Ckich_tcga_pan_can_atlas_2018*2Ckirc_bgi*2Ckirc_tcga_pan_can_atlas_2018*2Ckirp_tcga_pan_can_atlas_2018*2Claml_tcga_pan_can_atlas_2018*2Clcll_broad_2013*2Clgg_tcga_pan_can_atlas_2018*2Clgg_ucsf_2014*2Cliad_inserm_fr_2014*2Clihc_amc_prv*2Clihc_riken*2Clihc_tcga_pan_can_atlas_2018*2Cluad_broad*2Cluad_tcga_pan_can_atlas_2018*2Cluad_tsp*2Clusc_tcga_pan_can_atlas_2018*2Cmbl_broad_2012*2Cmbl_pcgp*2Cmbl_sickkids_2016*2Cmcl_idibips_2013*2Cmds_tokyo_2011*2Cmel_tsam_liang_2017*2Cmeso_tcga_pan_can_atlas_2018*2Cmixed_allen_2018*2Cmixed_pipseq_2017*2Cmm_broad*2Cmpnst_mskcc*2Cmrt_bcgsc_2016*2Cnbl_amc_2012*2Cnbl_target_2018_pub*2Cnbl_ucologne_2015*2Cnccrcc_genentech_2014*2Cnepc_wcm_2016*2Cnhl_bcgsc_2011*2Cnhl_bcgsc_2013*2Cnpc_nusingapore*2Cnsclc_unito_2016*2Cov_tcga_pan_can_atlas_2018*2Cpaac_jhu_2014*2Cpaad_qcmg_uq_2016*2Cpaad_tcga_pan_can_atlas_2018*2Cpaad_utsw_2015*2Cpact_jhu_2011*2Cpanet_arcnet_2017*2Cpanet_jhu_2011*2Cpanet_shanghai_2013*2Cpcnsl_mayo_2015*2Cpcpg_tcga_pan_can_atlas_2018*2Cpediatric_dkfz_2017*2Cplmeso_nyu_2015*2Cprad_broad*2Cprad_eururol_2017*2Cprad_fhcrc*2Cprad_mich*2Cprad_mskcc*2Cprad_mskcc_cheny1_organoids_2014*2Cprad_tcga_pan_can_atlas_2018*2Crms_nih_2014*2Crt_target_2018_pub*2Csarc_mskcc*2Csarc_tcga_pan_can_atlas_2018*2Cscco_mskcc*2Csclc_cancercell_gardner_2017*2Csclc_jhu*2Csclc_ucologne_2015*2Cskcm_broad*2Cskcm_broad_brafresist_2012*2Cskcm_tcga_pan_can_atlas_2018*2Cskcm_vanderbilt_mskcc_2015*2Cskcm_yale*2Cstad_pfizer_uhongkong*2Cstad_tcga_pan_can_atlas_2018*2Cstad_utokyo*2Csummit_2018*2Ctet_nci_2014*2Ctgct_tcga_pan_can_atlas_2018*2Cthca_tcga_pan_can_atlas_2018*2Cthym_tcga_pan_can_atlas_2018*2Cuccc_nih_2017*2Cucec_tcga_pan_can_atlas_2018*2Cucs_jhu_2014*2Cucs_tcga_pan_can_atlas_2018*2Cum_qimr_2016*2Curcc_mskcc_2016*2Cutuc_mskcc_2015*2Cuvm_tcga_pan_can_atlas_2018*2Cvsc_cuk_2018*2Cwt_target_2018_pub*2Cacyc_jhu_2016*2Cprostate_dkfz_2018*2Chistiocytosis_cobi_msk_2019*2Cutuc_cornell_baylor_mdacc_2019*2Cprad_su2c_2019*2Ccll_broad_2015*2Ccoad_cptac_2019*2Cbrca_mskcc_2019*2Cacc_2019*2Cpptc_2019*2Cprad_msk_2019*2Cccrcc_dfci_2019*2Cmpn_cimr_2013*2Cnsclc_tracerx_2017*2Cmnm_washu_2016*2Cbcc_unige_2016*2Ccoad_caseccc_2015*2Cmetastatic_solid_tumors_mich_2017*2Caml_ohsu_2018*2Cihch_smmu_2014*2Cnsclc_mskcc_2018*2Cskcm_dfci_2015*2Cskcm_mskcc_2014*2Cmel_ucla_2016*2Cutuc_msk_2019*2Cgbm_columbia_2019*2Cstad_oncosg_2018*2Cbrca_smc_2018*2Cluad_oncosg_2020*2Cangs_painter_2020*2Cmel_dfci_2019*2Clung_smc_2016*2Cutuc_igbmc_2021*2Ccscc_ucsf_2021*2Cchol_icgc_2017*2Chccihch_pku_2019*2Cihch_ismms_2015*2Cmbl_dkfz_2017*2Cpan_origimed_2020*2Ccrc_nigerian_2020*2Cdifg_glass_2019*2Cpancan_pcawg_2020*2Cucec_cptac_2020*2Cpaad_cptac_2021*2Clusc_cptac_2021*2Cluad_cptac_2020*2Cgbm_cptac_2021*2Cbrca_cptac_2020*2Cbrain_cptac_2020*2Cmpcproject_broad_2021*2Cbrca_hta9_htan_2022*2Clung_nci_2022*2Cmds_iwg_2022*2Cbiliary_tract_summit_2022*2Cpog570_bcgsc_2020*2Chcc_meric_2021*2Cprostate_pcbm_swiss_2019*2Cucec_ccr_cfdna_msk_2022*2Cucec_ccr_msk_2022*2Cmixed_selpercatinib_2020*2Clgsoc_mapk_msk_2022*2Cmng_utoronto_2021*2Cblca_bcan_hcrn_2022*2Caml_ohsu_2022*2Ccoad_silu_2022*2Cstmyec_wcm_2022*2Cbladder_columbia_msk_2018*2Csarcoma_msk_2022*2Ccll_broad_2022*2Ccoadread_cass_2020*2Cprad_msk_mdanderson_2023*2Ccrc_hta11_htan_2021*2Chcc_clca_2024*2Cbrca_fuscc_2020*2Cbrca_dfci_2020*2Cmsk_chord_2024*2Cchl_sccc_2023*2Cnormal_skin_fibroblast_2024*2Cnormal_skin_keratinocytes_2024*2Cnormal_skin_melanocytes_2024*2Covary_geomx_gray_foundation_2024*2Csarcoma_ucla_2024;*7B*22req*22: *7B*22method*22: *22POST*22,*22url*22: *22**Awww. cbioportal. org*api*studies*fetch*projection=DETAILED*22,*22data*22: 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"<html>\r\n<head><title>503
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Nimeka Ramanayake
Aug 11, 2025, 5:22:16 AMAug 11
to cbiop...@googlegroups.com
https://www.cbioportal.org/results/oncoprint?cancer_study_list=gbm_mayo_pdx_sarkaria_2019%2Cgbm_cptac_2021%2Cgbm_columbia_2019%2Cgbm_tcga_pub2013%2Cgbm_tcga_pub%2Cgbm_tcga%2Cgbm_tcga_gdc%2Cgbm_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna%2Cgistic%2Ccna_rae&case_set_id=all&gene_list=NOTCH2&geneset_list=%20&tab_index=tab_visualize&Action=Submit&mutations_gene=TP53&exclude_germline_mutations=true;{"req":{"method":"POST","url":"//www.cbioportal.org/api/generic_assay_meta/fetch","data":"{\"molecularProfileIds\":[\"gbm_tcga_pan_can_atlas_2018_methylation_hm27_hm450_merge\"]}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/generic_assay_meta/fetch"},"text":"<html>\r\n<head><title>503 Service Temporarily Unavailable</title></head>\r\n<body>\r\n<center><h1>503 Service Temporarily Unavailable</h1></center>\r\n<hr><center>nginx</center>\r\n</body>\r\n</html>\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n","statusText":"","statusCode":503,"status":503,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":503,"method":"POST","url":"//www.cbioportal.org/api/generic_assay_meta/fetch"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"content-length":"592","content-type":"text/html","date":"Mon, 11 Aug 2025 06:45:51 GMT","strict-transport-security":"max-age=31536000; includeSubDomains"},"header":{"content-length":"592","content-type":"text/html","date":"Mon, 11 Aug 2025 06:45:51 GMT","strict-transport-security":"max-age=31536000; includeSubDomains"},"type":"text/html","links":{},"body":null}
arrived at error during routine use of program
Benjamin Gross
Aug 11, 2025, 9:52:51 AMAug 11
to Nimeka Ramanayake, cBioPortal for Cancer Genomics Discussion Group
Hi Nimeka,
This page is loading now.. You may have attempted the request when the server was under unusually network traffic or latency. Can you try again and let us know if you are still receiving the error.
Thanks,
-Benjamin
On Aug 11, 2025, at 2:47 AM, Nimeka Ramanayake <nimeka.r...@gmail.com> wrote:
https://www.cbioportal.org/results/oncoprint?cancer_study_list=gbm_mayo_pdx_sarkaria_2019%2Cgbm_cptac_2021%2Cgbm_columbia_2019%2Cgbm_tcga_pub2013%2Cgbm_tcga_pub%2Cgbm_tcga%2Cgbm_tcga_gdc%2Cgbm_tcga_pan_can_atlas_2018&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna%2Cgistic%2Ccna_rae&case_set_id=all&gene_list=NOTCH2&geneset_list=%20&tab_index=tab_visualize&Action=Submit&mutations_gene=TP53&exclude_germline_mutations=true;{"req":{"method":"POST","url":"//www.cbioportal.org/api/generic_assay_meta/fetch","data":"{\"molecularProfileIds\":[\"gbm_tcga_pan_can_atlas_2018_methylation_hm27_hm450_merge\"]}","headers":{"accept":"application/json","content-type":"application/json"}},"xhr":{"_url":"//www.cbioportal.org/api/generic_assay_meta/fetch"},"text":"<html>\r\n<head><title>503 Service Temporarily Unavailable</title></head>\r\n<body>\r\n<center><h1>503 Service Temporarily Unavailable</h1></center>\r\n<hr><center>nginx</center>\r\n</body>\r\n</html>\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n<!-- a padding to disable MSIE and Chrome friendly error page -->\r\n","statusText":"","statusCode":503,"status":503,"statusType":5,"info":false,"ok":false,"redirect":false,"clientError":false,"serverError":true,"error":{"status":503,"method":"POST","url":"//www.cbioportal.org/api/generic_assay_meta/fetch"},"created":false,"accepted":false,"noContent":false,"badRequest":false,"unauthorized":false,"notAcceptable":false,"forbidden":false,"notFound":false,"unprocessableEntity":false,"headers":{"content-length":"592","content-type":"text/html","date":"Mon, 11 Aug 2025 06:45:51 GMT","strict-transport-security":"max-age=31536000; includeSubDomains"},"header":{"content-length":"592","content-type":"text/html","date":"Mon, 11 Aug 2025 06:45:51 GMT","strict-transport-security":"max-age=31536000; includeSubDomains"},"type":"text/html","links":{},"body":null}arrived at error during routine use of program
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Tram Tran
Aug 13, 2025, 8:37:18 AMAug 13
to cbiop...@googlegroups.com
To whom it may concern,
When I tried to get the correlation of expression, the result showed for a little then the website crashed twice. Below is the error message.
Thank you,
Anh
{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'length')","url":"https://www.cbioportal.org/results/coexpression?cancer_study_list=pancan_pcawg_2020&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Ccna&case_set_id=pancan_pcawg_2020_cnaseq&gene_list=KDM5A%252C%2520SMYD2&geneset_list=%20&tab_index=tab_visualize&Action=Submit"}
https://www.cbioportal.org/results/coexpression?cancer_study_list=pancan_pcawg_2020&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Ccna&case_set_id=pancan_pcawg_2020_cnaseq&gene_list=KDM5A%252C%2520SMYD2&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'length')"}
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Benjamin Gross
Aug 13, 2025, 8:54:16 AMAug 13
to Tram Tran, cbiop...@googlegroups.com
Hi Anh,
Thank you for the email. I am able to load the page and I cannot get the page to crash when I navigate on it. Do you know what you were doing on the page when it crashed? Are you able to reproduce the error consistently?
Thanks,
-Benjamin
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Wiley, Sam S., M.S., CGC
Aug 13, 2025, 1:42:13 PMAug 13
to cbiop...@googlegroups.com
Hello,
I searched for ESR1 using the breast studies. When I clicked on the Mutations tab, I received this error. Many on our team are having the same issue.
{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'length')","url":https://www.cbioportal.org/results/mutations?cancer_study_list=acbc_mskcc_2015%2Cbreast_cptac_gdc%2Cbrca_hta9_htan_2022%2Cbrca_metabric%2Cbreast_msk_2025%2Cbreast_msk_2018%2Cbrca_pareja_msk_2020%2Cbrca_mskcc_2019%2Cbreast_alpelisib_2020%2Cbrca_smc_2018%2Cbrca_bccrc_xenograft_2014%2Cbrca_msk_2025%2Cbfn_duke_nus_2015%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_sanger%2Cbrca_tcga_pub2015%2Cbrca_tcga%2Cbrca_tcga_pub%2Cbrca_tcga_pan_can_atlas_2018%2Cbrca_tcga_gdc%2Cbrca_jup_msk_2020%2Cbrca_mapk_hp_msk_2021%2Cmbc_msk_2021%2Cbrca_aurora_2023%2Cbrca_dfci_2020%2Cbrca_igr_2015%2Cbreast_ink4_msk_2021%2Cilc_msk_2023%2Cbrca_cptac_2020%2Cbrca_mbcproject_wagle_2017%2Cbrca_mbcproject_2022%2Cbrca_fuscc_2020&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations&case_set_id=all&gene_list=ESR1&geneset_list=%20&tab_index=tab_visualize&Action=Submit}
https://www.cbioportal.org/results/mutations?cancer_study_list=acbc_mskcc_2015%2Cbreast_cptac_gdc%2Cbrca_hta9_htan_2022%2Cbrca_metabric%2Cbreast_msk_2025%2Cbreast_msk_2018%2Cbrca_pareja_msk_2020%2Cbrca_mskcc_2019%2Cbreast_alpelisib_2020%2Cbrca_smc_2018%2Cbrca_bccrc_xenograft_2014%2Cbrca_msk_2025%2Cbfn_duke_nus_2015%2Cbrca_bccrc%2Cbrca_broad%2Cbrca_sanger%2Cbrca_tcga_pub2015%2Cbrca_tcga%2Cbrca_tcga_pub%2Cbrca_tcga_pan_can_atlas_2018%2Cbrca_tcga_gdc%2Cbrca_jup_msk_2020%2Cbrca_mapk_hp_msk_2021%2Cmbc_msk_2021%2Cbrca_aurora_2023%2Cbrca_dfci_2020%2Cbrca_igr_2015%2Cbreast_ink4_msk_2021%2Cilc_msk_2023%2Cbrca_cptac_2020%2Cbrca_mbcproject_wagle_2017%2Cbrca_mbcproject_2022%2Cbrca_fuscc_2020&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations&case_set_id=all&gene_list=ESR1&geneset_list=%20&tab_index=tab_visualize&Action=Submit;{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'length')"}
Thanks,
Sam
Samantha S. Wiley, MS, CGC (she/her) | Licensed, Certified Genetic Counselor | Division of Laboratory Genetics & Genomics | Department of Laboratory Medicine and Pathology | Phone: 507-293-3430 | Fax: 507-284-0670 | Email: wiley.s...@mayo.edu | Mayo Clinic | 200 First Street S.W. | Rochester, MN 55905 | www.mayoclinic.org
Aaron L
Aug 13, 2025, 1:49:37 PMAug 13
to Wiley, Sam S., M.S., CGC, cbiop...@googlegroups.com
Hi Samantha,
We had a server issue earlier today. Could you try again?
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Wiley, Sam S., M.S., CGC
Aug 13, 2025, 2:32:07 PMAug 13
to Aaron L, cbiop...@googlegroups.com
It’s working, thanks!
Sam
Samantha S. Wiley, MS, CGC (she/her) | Licensed, Certified Genetic Counselor | Division of Laboratory Genetics & Genomics | Department of Laboratory Medicine and Pathology | Phone: 507-293-3430 | Fax: 507-284-0670 | Email: wiley.s...@mayo.edu | Mayo Clinic | 200 First Street S.W. | Rochester, MN 55905 | www.mayoclinic.org
Essam Hady
Aug 15, 2025, 3:39:08 PMAug 15
to cbiop...@googlegroups.com
https://www.cbioportal.org/results/mutations?case_set_id=all&gene_list=DIO2&cancer_study_list=5c8a7d55e4b046111fee2296;{"type":"ErrorBoundary","log":"TypeError:
Cannot read properties of undefined (reading 'length')"}
I want mutations of DIO2 gene and i get this message
Tram Tran
Aug 15, 2025, 3:39:08 PMAug 15
to Benjamin Gross, cbiop...@googlegroups.com
Hi Benjamin,
I was graphing the correlation of expression of 2 genes. In first crash, the graph was up for a few seconds. In the second crash, the result was up long enough for me to download the data so I think it was a few minutes. The error message told me to send the link to the listed email, so that is why I sent the report of crashing.
Thank you,
Anh
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