No of Datasets

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shivani gupta

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Nov 13, 2022, 11:51:00 PM11/13/22
to cBioPortal for Cancer Genomics Discussion Group
Hi


What is the size of repository holding? (no. of datasets in the repository)


Thanks
Shivani Gupta

Jessica Singh

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Nov 14, 2022, 3:27:18 AM11/14/22
to cBioPortal for Cancer Genomics Discussion Group
Hi Shivani, 

There are 363 studies available on cBioPortal right now. 

Regards, 
Jessica

shivani gupta

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Nov 14, 2022, 9:33:42 AM11/14/22
to Jessica Singh, cBioPortal for Cancer Genomics Discussion Group
Hi Jessica,

Thanks for the information.

Can you please provide following question:

Is there publicly available repository schema that can be accessed (published and available?

Is there documentation or guide explaining the available repository schema?

Thanks
Shivani

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Thanks & Regards
Shivani Gupta

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debr...@mskcc.org

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Nov 18, 2022, 6:28:06 PM11/18/22
to guptash...@gmail.com, jes...@thehyve.nl, cbiop...@googlegroups.com

Hi Shivani,

 

Thanks for reaching out!

 

Not entirely sure what schema you are looking for, but here are a few.

 

Our database schema looks like this:

 

https://docs.cbioportal.org/cbioportal-er-diagram/

 

In addition all our file formats are described here:

 

https://docs.cbioportal.org/file-formats/

 

Our API schema is defined here:

 

https://www.cbioportal.org/api/swagger-ui/index.html

 

Hope that helps! Let us know if you are looking for something else

 

Thanks!

Ino

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