can't see expression data for TCGA

[Rory Johnson]

Hi everybody

I have a newbie question, sorry if I'm missing something obvious!

I'm trying to visualise expression data. I've been following the tutorial here:

https://www.youtube.com/watch?v=YUxVv6pkxD4

The trainer refers to the Expression tab on the top row.

However when I open exactly the same data, the Expression tab is missing:

Is there some way to toggle on this data, or its been removed, or I"m missing something ?

Thanks a lot for any guidance!

Fabulous resource, I love the tutorial videos.

Rory

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Rory Johnson

Associate Professor

Profile: https://people.ucd.ie/rory.johnson

Laboratory for Genomics of Long noncoding RNA and Disease

Website: https://gold-lab.org/

Affiliated to: School of Biology and Environmental Science, University College Dublin

Postal address: UCD School of Biology and Environmental Science, UCD O'Brien Centre for Science, University College Dublin, Belfield, Dublin 4, Ireland D04 V1W8

[Zeynep Karagöz]

Hi Rory, 

Thanks for reaching out! Happy to hear you find the online tutorials useful. 

This is a sign for us to think about updating the tutorials actually because the specific functionality you're looking for has been moved to another tab since the tutorial was recorded.

You can head to the Plots tab in the Results page (so just the next tab from where you're at in your screen shot) and hit the mRNA vs Study button to quickly plot expression vs cancer study:

You can click here to visit this page.

Please hit reply-all if you have further questions.

Best,

Zeynep Karagöz, PhD

Product Owner & Data Engineer

E zey...@thehyve.nl

T +31 30 700 9713

W thehyve.nl

   

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[Rory Johnson]

Zeynep

thanks so much for your helpful reply and excellent support! I'll check this out.

cBioportal is brilliant, very well designed.

All the best

Rory