Uploading public data

[HIROMI YANASE]

Dear cBioPortal Team,

 

Can DNA/RNA sample quality information (such as DV200 and ΔΔCq) be uploaded into cBioPortal?

If so, what steps are required to do so?

 

Thank you for your continued support.

 

Regards,

Hiromi

 

------------------------------------------------------
Hiromi Yanase

Evidence Generation Department

Medical Affairs Division

 

KONICAMINOLTA REALM, INC.

Hamamatsucho Bldg.

1-1-1 Shibaura, Minatoku,Tokyo 105-0023,JAPAN

Tel:+81 3-6324-1023

E-mail:hiormi...@konicaminolta.com

-------------------------------------------------------

 

[Tali Mazor]

Hi Hiromi,

Are you interested in adding this data to a study in a local installation of cBioPortal? If so, cBioPortal has a flexible data model and you can absolutely add QC data to your study. For attributes that are a single value per sample like DV200, I'd suggest adding the values as sample-level clinical data elements: https://docs.cbioportal.org/file-formats/#clinical-data

-Tali

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[HIROMI YANASE]

Hello Tali,

 

Yes, I’m trying to add the QC data to a study in a local installation of cBioPortal.
Thank you for your reply.
I’ll try it according to your instructions.

 

Thanks,

Hiromi

[Stewart, Caitlin]

Hi,

 

I wanted to inquire about uploading public data for a paper currently under review at JCI.

 

What format do you need the data in?

What other information do you need from us?

 

Thanks,

Caitlin Stewart PhD

Scientific Research Lead

Single-Cell Analytics Innovation Lab (SAIL)

Memorial Sloan Kettering Cancer Center
Phone: 646-888-2319

 

 

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[Zeynep Karagöz]

Hi Caitlin, 

Thanks for reaching out. I am looping in @ritika...@gmail.com from the data curation team to coordinate the public data release. 
You can find the required file formats here and more information on uploading data to the public portal here. 

Please hit reply all if you have further questions.

Best,

Zeynep Karagöz

Product Owner & Data Engineer

E zey...@thehyve.nl

T +31 30 700 9713

W thehyve.nl

   

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