data upload

[Reed, Katelyn A.]

Dear all,

We may be interested in uploading our data into your cBioPortal system.  Can you provide me with guidance on how we could potentially go about doing that?  In addition, do you have any documentation requirements, for instance an IRB approval letter that is needed etc?

 

Best,

 

Katie Reed | Program Manager | Research and Innovation Office | Department of Laboratory Medicine and Pathology | 507-284-0503 | Mayo Clinic | 200 First Street SW | Rochester, MN 55905 |www.mayoclinic.org

 

[debr...@mskcc.org]

Dear Katie Reed,

 

Thanks for reaching out!

 

I’m forwarding your request to our curator team (CC’ed). Are you looking to host a public or private data set in cBioPortal?

 

Thanks!

Ino

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[Reed, Katelyn A.]

Good morning,

We would like to do public if possible.

Best,
Katie

[kun...@mskcc.org]

Hi Katie,

Sure we can help with this. 

What data profiles do you wish to upload? Can you provide a little background of the cohort?

Thanks,

Ritika

On Feb 25, 2022, at 9:35 AM, Reed, Katelyn A. <Reed.K...@mayo.edu> wrote:

Good morning,

We would like to do public if possible.

Best,
Katie

 

From: debr...@mskcc.org <debr...@mskcc.org> 
Sent: Thursday, February 24, 2022 4:17 PM
To: Reed, Katelyn A. <Reed.K...@mayo.edu>; cbiop...@googlegroups.com
Cc: Hafner, Stephanie S. <Hafner.S...@mayo.edu>; kun...@mskcc.org; su...@mskcc.org
Subject: [EXTERNAL] Re: [cbioportal] data upload

 

[Reed, Katelyn A.]

Hi Ritika,

We are interested in uploading exome, transcriptome, methylome and proteome data for Tcell Lymphoma.

Best,
Katie