possible discrepancy

21 views
Skip to first unread message

Parl, Fritz

unread,
Jan 23, 2023, 2:54:43 PM1/23/23
to cBiop...@googlegroups.com

Dear cBioPortal Team,

 

I have noticed that there are 34 samples with a Mutation Count of 1 and a TMB (nonsynonymous) score of 0.0.  Is this a discrepancy and if so, what is the explanation?

 

Here are the samples:

TCGA-XF-AAN8-01

TCGA-AC-A2FK-01

TCGA-IG-A4QT-01

TCGA-06-0167-01

TCGA-AB-2823-03

TCGA-AB-2837-03

TCGA-AB-2840-03

TCGA-AB-2842-03

TCGA-AB-2946-03

TCGA-HT-8107-01

TCGA-P5-A5EY-01

TCGA-P5-A5F6-01

TCGA-BC-A10X-01

TCGA-77-A5FZ-01

TCGA-3H-AB3O-01

TCGA-LK-A4O4-01

TCGA-HZ-7920-01

TCGA-HZ-7924-01

TCGA-HZ-8638-01

TCGA-IB-AAUV-01

TCGA-Q3-A5QY-01

TCGA-TT-A6YO-01

TCGA-WB-A80L-01

TCGA-EJ-A46B-01

TCGA-G9-6370-01

TCGA-XK-AAJU-01

TCGA-2G-AAGN-01

TCGA-BJ-A0ZJ-01

TCGA-BJ-A28T-01

TCGA-EL-A3H3-01

TCGA-EL-A3ZN-01

TCGA-ET-A39L-01

TCGA-X7-A8M7-01

TCGA-XM-A8RL-01

 

Thank you

 

Fritz Parl

Vanderbilt University Medical Center

Nashville, TN 37232


ramyama...@gmail.com

unread,
Jan 24, 2023, 2:32:11 PM1/24/23
to cBioPortal for Cancer Genomics Discussion Group
Hi Fritz,

Are you querying for these samples in the PanCancer Atlas datasets? Can you share the link to where you are seeing 0.0 so we can take a closer look?

Thanks,
Ramya
Reply all
Reply to author
Forward
0 new messages