How to git previous cbioportal release?

[Harry Sun]

I use "git clone https://github.com/cBioPortal/cbioportal.git" to get current release such as cbioportal v6.0.9. How can I git cbioportal v6.0.8?

Thanks,

Harry

[JJ Gao]

Hi Harry,

You can download the previous version here: Releases · cBioPortal/cbioportal (github.com)

Or do a git checkout of the identified commit: git - Cloning an older version of github repo - Stack Overflow

Best,

-JJ

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[Harry Sun]

Dr.Gao,

Do you know who is in charge of cbioportal authentication?

Since v6.0.0, cbioportal made a big change on user authentication that resulted in my local cbioportal that no longer works for authentication. I want to ask a few questions to your developer in  authentication.

Thank you,

Harry

[de Bruijn, Ino]

Hi Harry,

 

Thanks for reaching out! We don’t have one person in charge of authentication. It’s a collaborative effort. Did you find the v6 migration guide part on security? See:

 

https://docs.cbioportal.org/migration-guide/#v5---v6

 

If you are looking for additional guidance, perhaps @Charles Haynes (CC’ed) might be able to help

 

Best wishes,

Ino

 

From: cbiop...@googlegroups.com <cbiop...@googlegroups.com> on behalf of Harry Sun <hds...@gmail.com>
Date: Monday, August 5, 2024 at 10:01 AM
To: JJ Gao <jianji...@gmail.com>
Cc: cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Subject: [EXTERNAL] Re: [cbioportal] How to git previous cbioportal release?

Dr. Gao, Do you know who is in charge of cbioportal authentication? Since v6. 0. 0, cbioportal made a big change on user authentication that resulted in my local cbioportal that no longer works for authentication. I want to ask a few questions

To view this discussion on the web visit https://groups.google.com/d/msgid/cbioportal/CAHX2U_ka%2BkWD8VnvmfNTgDcp_B%3Dz9fZMW2McPkC4DBZw0KPn5w%40mail.gmail.com.

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[Harry Sun]

Who made the change to v6.0.0 on authentication? Because a big change from v5. to v6 if you compare applicationContext-security.xml in v5 with v6.

Thanks,

Harry

[de Bruijn, Ino]

What is the specific issue you are trying to solve? Are you looking for a high level explanation of the changes?

 

The v6 release includes an upgrade to spring security, which addressed several security issues:

 

https://github.com/cBioPortal/cbioportal/releases/tag/v6.0.0

 

Thanks!
Ino

 

From: Harry Sun <hds...@gmail.com>
Date: Monday, August 5, 2024 at 10:27 AM
To: de Bruijn, Ino <debr...@mskcc.org>
Cc: JJ Gao <jianji...@gmail.com>, Charles Haynes <cha...@d3b.center>, cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Subject: [EXTERNAL] Re: [cbioportal] How to git previous cbioportal release?

[Harry Sun]

Yes, I have a specific issue. Before I used AD to authenticate, now I can't make it work v6. I need to directly communicate with a developer who did v6's authentication.

Thanks,

Harry 

[de Bruijn, Ino]

Gotcha –

 

Yes there were quite some changes necessary for azure. This is how we changed it in our production configuration:

 

https://github.com/knowledgesystems/knowledgesystems-k8s-deployment/blob/master/public-eks/cbioportal-prod/cbioportal_spring_boot.yaml#L119C59-L127

 

Used to be:

 

https://github.com/knowledgesystems/knowledgesystems-k8s-deployment/blob/54511face343ee70a835deb974c62cc5bc322602/public-eks/cbioportal-prod/cbioportal_spring_boot.yaml#L122-L123

 

Feel free to send specific questions on the email chain, and hopefully others can chime in

 

Best wishes,

Ino

 

From: Harry Sun <hds...@gmail.com>
Date: Monday, August 5, 2024 at 10:40 AM
To: de Bruijn, Ino <debr...@mskcc.org>
Cc: JJ Gao <jianji...@gmail.com>, Charles Haynes <cha...@d3b.center>, cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Subject: [EXTERNAL] Re: [cbioportal] How to git previous cbioportal release?

Yes, I have a specific issue. Before I used AD to authenticate, now I can't make it work v6. I need to directly communicate with a developer who did v6's authentication. Thanks, Harry On Mon, Aug 5, 2024 at 9: 36 AM de Bruijn, Ino <debruiji@ mskcc. org>