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Thanks for much for your reply and for providing some useful tips for my questions.
Yes, I already watched the C-bioportal API tutorial, but I am still unfamiliar with how to use API to do the same thing as I did on the website.
Maybe I need more examples to get more understandings of how C-bioportal API works.
So if you can provide more examples of how to use C-bioportal API in R ( such as query by the gene, and see what samples have this gene mutated as we see on the website), that will be very helpful.
Also, thanks so much for suggesting how to get data using cBioPortalData library.
I believe that way will be a very convenient way to extract the data for each dataset.
For this one, I have a quick question about getting data.
cBioDataPack("laml_tcga") will extract the data from laml_tcga(studyID) and I can loop through all of the studiesId to get all of the data.
I wonder if I can get all of the data directly(from all of the studies) without looping through?
Thanks for your time and for your help.
I really appreciate it.