MAF generation: Genome Nexus vs vcf2maf
Matthew Grimmer
de Bruijn, Ino
Hi Matthew,
Thanks for reaching out! The vcf2maf outputs work fine too. One thing to consider is that the default transcript list for some genes might be different (see explanation here)
Hope that helps!
Best wishes,
Ino
From:
'Matthew Grimmer' via cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Date: Tuesday, March 25, 2025 at 8:50 AM
To: cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Subject: [EXTERNAL] [cbioportal] MAF generation: Genome Nexus vs vcf2maf
The documentation seems to suggest a preference for (or an eventual move to) Genome Nexus over vcf2maf. Is there any problem with vcf2maf outputs, now or expected in the future? Thanks. -- You received this message because you are subscribed
The documentation seems to suggest a preference for (or an eventual move to) Genome Nexus over vcf2maf. Is there any problem with vcf2maf outputs, now or expected in the future? Thanks.
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