MSKCC cBioPortal Question

[Jake Reed]

Hello, 

I'm a Data Scientist/Bioinformatician at Huntsman Cancer Institute, and I'm reaching out to find out what a rough timeline would be on getting a study published on MSKCC's public cBioPortal instance. 

If I provided a study in a format that passes validation (validateData.py), what is the expected timeframe for getting the study on https://www.cbioportal.org/? 

Let me know, or point me in the right direction, please. Thanks!

Jake Reed

Data Scientist

Department of Oncological Sciences

Huntsman Cancer Institute at the University of Utah

2000 Circle of Hope Dr. | Room 4528.2

SLC, UT 84112

[Ritika Kundra]

Hi Jake,

Thanks for reaching out and considering hosting your data with cBioPortal.

The timeline can vary a bit depending on a few things:

• First, it is to check whether the study aligns with the portal’s requirements (beyond just passing validation).
• Processing + review: There are a few internal steps, like data processing, QA, and review, before anything goes live.
• Size/complexity: Bigger or more complex studies can take a bit longer to work through.

Roughly speaking, once everything is in good shape, it can take anywhere from 2-3 weeks, but happy to give a more specific estimate if you can share a bit more about the study.

Thanks,

Ritika

--
You received this message because you are subscribed to the Google Groups "cBioPortal for Cancer Genomics Discussion Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cbioportal+...@googlegroups.com.
To view this discussion visit https://groups.google.com/d/msgid/cbioportal/CO1PR11MB517002FE420F9D41E375ED88D9EF2%40CO1PR11MB5170.namprd11.prod.outlook.com.