I just tried to Query GENIE cohort v.19.0 for PTEN mutations. I have had trouble querying this large group of samples since it expanded in size a short while ago. Also, is there a way to query part of a gene and not the whole gene?
Error log
{"type":"ErrorBoundary","log":"ChunkLoadError: Loading chunk 881 failed.\n(error: https://frontend.cbioportal.org/reactapp/881.15177b61698f7fdfafd7.chunk.js)","url":"https://genie.cbioportal.org/results/oncoprint?cancer_study_list=genie_public&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna&case_set_id=genie_public_cnaseq&gene_list=PTEN&geneset_list=%20&tab_index=tab_visualize&Action=Submit"}
Sincerely,
Steven Enkemann
Hi Steven,
I tried querying the GENIE cohort (v19.0) for PTEN, and it looks correct on my end. Could you give it another try?
You can definitely query part of a gene. Please refer to the Onco Query Language (OQL) documentation for more details.
Best,
Gaofei
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