Uploading public data

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Tobochnik, Steven D.,MD

Mar 14, 2023, 5:56:39 PM3/14/23
to cbiop...@googlegroups.com, Ligon, Keith L.,MD, PhD
Hi cBioPortal team,

I am submitting a manuscript that requires all cancer sequencing data to be publicly available to reviewers, and was hoping to use the cBioPortal. My project involves glioma sequencing data from the DFCI Neuro-Oncology cohort, which overlaps in part with the currently available DFCI-Profile Glioma Cohort 2013-2018, but includes additional newer data as well.

Would it be possible to upload this additional dataset, and if so, what would the timeframe be?

Thanks so much,

Steven Tobochnik, MD
Associate Neurologist, Brigham and Women's Hospital
Instructor in Neurology, Harvard Medical School
Director, EEG Laboratory, VA Boston Epilepsy Center

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Ligon, Keith L.,MD, PhD

Mar 14, 2023, 5:56:44 PM3/14/23
to Tobochnik, Steven D.,MD, cbiop...@googlegroups.com

Just to clarify I think we would be releasing on the GENIE cBio which is where our prior larger set is located for registered public access.

Nikolaus Schultz

Mar 15, 2023, 10:07:28 AM3/15/23
to Ligon, Keith L.,MD, PhD, Tobochnik, Steven D.,MD, cbiop...@googlegroups.com, Kundra, Ritika, Madupuri, Ramyasree/Sloan Kettering Institute
Hi Keith, Steven,

Ritika and her team (cc’d) will be able to help with this.

Just one detail for clarification: The data will be made available on the public cBioPortal (cbioporrtal.org), not the GENIE portal. 


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