What's the meaning of "Somatic Status" in the file of "data_clinical _sample.txt"?

330 views
Skip to first unread message

谢剑竹

unread,
Dec 18, 2021, 4:59:00 PM12/18/21
to cbioportal
What's the meaning of "Somatic Status" in the file of "data_clinical _sample.txt"?Does it mean that the mutations detected of the tumor tissue was matched or unmatched with that of the normal tissue?

Pim van Nierop

unread,
Dec 20, 2021, 7:45:47 AM12/20/21
to 谢剑竹, cbioportal
Hello Jianzhu,

Thank you for reaching out. To what study does the data_clinical _sample.txt file belong? Clinical parameters are defined independently for studies.

All the best,
Pim



On Sat, Dec 18, 2021 at 10:59 PM 谢剑竹 <jianz...@shgh.cn> wrote:
What's the meaning of "Somatic Status" in the file of "data_clinical _sample.txt"?Does it mean that the mutations detected of the tumor tissue was matched or unmatched with that of the normal tissue?

--
You received this message because you are subscribed to the Google Groups "cBioPortal for Cancer Genomics Discussion Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cbioportal+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cbioportal/tencent_04E4232F434C783B0A547354%40qq.com.


--

Pim van Nierop

Software Engineer / cBioPortal specialist


E p...@thehyve.nl

T +31(0)30 700 9713

M +31(0)6 29464525

W thehyve.nl



    

Pim van Nierop

unread,
Dec 21, 2021, 3:46:58 AM12/21/21
to cBioPortal for Cancer Genomics Discussion Group

Fwd to group.

Dear Pim
The file belong to the study of " Non-Small Cell Cancer (MSKCC, Cancer Discov 2017)",and the pmid number is  28336552
Thank you very much
Xie
 
 
 
------------------ Original ------------------
From:  "Pim van Nierop"<p...@thehyve.nl>;
Date:  Mon, Dec 20, 2021 08:45 PM
To:  "谢剑竹"<jianz...@shgh.cn>;
Cc:  "cbioportal"<cbiop...@googlegroups.com>;
Subject:  Re: [cbioportal] What's the meaning of "Somatic Status" in the file of "data_clinical _sample.txt"?

Ritika Kundra

unread,
Dec 28, 2021, 7:14:55 PM12/28/21
to Pim van Nierop, cBioPortal for Cancer Genomics Discussion Group
Hi Xie,

The somatic status refers to if a sample in the study has a matched normal or not. 

Let us know if you have any other questions.

Thanks,
Ritika

To view this discussion on the web visit https://groups.google.com/d/msgid/cbioportal/CADELqD%3DYq6kuO7842eAoM7HAFJRGGaJyEQb38A-x_UnMWvzs_w%40mail.gmail.com.
Reply all
Reply to author
Forward
0 new messages