How do you define the HOMODEL and AMP status for CCLE data.

201 views

Skip to first unread message

Caijin Lin

unread,

Feb 9, 2022, 7:03:25 AM2/9/22

to cbiop...@googlegroups.com

Dear cBioportal working groups,

I’m wondering how you define the HOMODEL and AMP status for CCLE CNV data since DepMap only provide gene-level log2(relative to ploidy + 1) copy number values. Which thresholds do you choose to categorize HOMODEL and AMP?

Thanks.

Regards,

Lin.

David Higgins

unread,

Feb 9, 2022, 7:30:46 AM2/9/22

to Caijin Lin, cbiop...@googlegroups.com

Hi Lin,

Information about how we define and calculate our CNV calls is provided in our FAQ pages here.

Best,

David M. Higgins, Ph.D. | (he/him)

Informatics Program Manager

Center for Data-Driven Discovery in Biomedicine (D3b)

Children’s Hospital of Philadelphia

--
You received this message because you are subscribed to the Google Groups "cBioPortal for Cancer Genomics Discussion Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cbioportal+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cbioportal/ME2PR01MB54922784B2AB5070B4A2D60FDD2E9%40ME2PR01MB5492.ausprd01.prod.outlook.com.

Reply all

Reply to author

Forward

0 new messages