OncoKB missing information

[Waryszak Marcin]

Hello everyone,

I got a normal API integration with OncoKB on our internal cbioportal, ports open, no CORS on the communication, however, for some reason (completely unknown to me) it seems like the response back from the OncoKB is missing Biological Effect information (and other if there are other respective tabs):

This is what I see

This is what should be displayed:

Thank you

[Waryszak Marcin]

The first screenshot which didn't load:

[Benjamin Gross]

Hi Marcin,

Thank you for your email.  John, is this something you can help Marcin with?

Best

-Benjamin

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[Konecny, John]

@Waryszak Marcin,

 

Do you have an OncoKB license? If so, what email are you using for your OncoKB account? I want to make sure you have API access.

 

@Benjamin Gross,

 

Do you know what OncoKB API endpoint is being used?

 

++OncoKB dev team

 

Regards,

John Konecy

 

 

From: Benjamin Gross <benjami...@gmail.com>
Date: Monday, August 11, 2025 at 09:46
To: Waryszak Marcin <warysza...@gmail.com>, Konecny, John <kone...@mskcc.org>
Cc: cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Subject: [EXTERNAL] Re: [cbioportal] OncoKB missing information

Hi Marcin, Thank you for your email. John, is this something you can help Marcin with? Best -Benjamin On Aug 11, 2025, at 5: 23 AM, Waryszak Marcin <waryszak. marcin@ gmail. com> wrote: The first screenshot which didn't load: On Monday, 11

Hi Marcin,

 

Thank you for your email.  John, is this something you can help Marcin with?

 

Best

-Benjamin

On Aug 11, 2025, at 5:23 AM, Waryszak Marcin <warysza...@gmail.com> wrote:

 

The first screenshot which didn't load:

 

On Monday, 11 August 2025 at 11:22:04 UTC+2 Waryszak Marcin wrote:

Hello everyone,

I got a normal API integration with OncoKB on our internal cbioportal, ports open, no CORS on the communication, however, for some reason (completely unknown to me) it seems like the response back from the OncoKB is missing Biological Effect information (and other if there are other respective tabs):

 

This is what I see

Error! Filename not specified.

 

This is what should be displayed:

 

Thank you

 

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[Benjamin Gross]

Hi John,

The endpoint is /annotate/mutations/byProteinChange.

The default URL in code is https://public.api.oncokb.org/api/v1

but the docs (https://docs.cbioportal.org/deployment/integration-with-other-webservices/oncokb-data-access/) specify:

https://www.oncokb.org/api/v1/

-B

On Aug 11, 2025, at 11:11 AM, Konecny, John <kone...@mskcc.org> wrote:

@Waryszak Marcin,

 

Do you have an OncoKB license? If so, what email are you using for your OncoKB account? I want to make sure you have API access.

 

@Benjamin Gross,

 

Do you know what OncoKB API endpoint is being used?

 

++OncoKB dev team

 

Regards,

John Konecy

 

 

From: Benjamin Gross <benjami...@gmail.com>
Date: Monday, August 11, 2025 at 09:46
To: Waryszak Marcin <warysza...@gmail.com>, Konecny, John <kone...@mskcc.org>
Cc: cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com>
Subject: [EXTERNAL] Re: [cbioportal] OncoKB missing information

Hi Marcin, Thank you for your email. John, is this something you can help Marcin with? Best -Benjamin On Aug 11, 2025, at 5: 23 AM, Waryszak Marcin <waryszak. marcin@ gmail. com> wrote: The first screenshot which didn't load: On Monday, 11

Hi Marcin,

 

Thank you for your email.  John, is this something you can help Marcin with?

 

Best

-Benjamin

On Aug 11, 2025, at 5:23 AM, Waryszak Marcin <warysza...@gmail.com> wrote:

 

The first screenshot which didn't load:

<1.png>

 

On Monday, 11 August 2025 at 11:22:04 UTC+2 Waryszak Marcin wrote:

Hello everyone,

I got a normal API integration with OncoKB on our internal cbioportal, ports open, no CORS on the communication, however, for some reason (completely unknown to me) it seems like the response back from the OncoKB is missing Biological Effect information (and other if there are other respective tabs):

 

This is what I see

Error! Filename not specified.

 

This is what should be displayed:

 

Thank you

 

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To view this discussion visit https://groups.google.com/d/msgid/cbioportal/8599c325-9504-4127-87a8-1fc387e15c87n%40googlegroups.com.

<1.png>

 

[frans frans]

Hi Benjamin,

In relation to your reply on " The default URL in code is https://public.api.oncokb.org/api/v1". I am wondering what this public api for oncokb is? Is it like a public and free version of the oncokb api that gives less information?

Thanks,
Frans