VCF files

[Gabriel Arantes]

I know this is probably a silly question, but is it possible to download VCF files directly from cBioPortal? For instance, I've filtered samples from the TCGA-BRCA project and I want to download the VCF for only 10 samples.

How can I do that?

Thanks in advance,

Gabriel

[Nikolaus Schultz]

Hi Gabriel,

Apologies for the late response. Unfortunately, this is not possible at the moment. 

You would have to download the full MAF file (tabular version of the mutation data) from our DataHub and subset it to your samples of interest. 

Niki.

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