cancer unknown primary

[McEvoy Christopher]

Hi there

 

Have just started using cbioportal recently. Am very impressed!

 

I have a question regarding finding the best cancer type match for a cancer unknown primary (CUP) based on the pattern of gene mutations. If I have a CUP with, for example, TP53, TERT, PIK3CA & ERBB2 variants how do I find what cancer types in the pan-cancer data set  have variants in those 4 specific genes?

 

Hope that you can help.

 

Kind regards,

 

Chris

 

Christopher McEvoy, PhD
Medical Scientist



Phone  +61 3 85598442

Email  christoph...@petermac.org

 

 

Disclaimer: This email (including any attachments or links) may contain confidential and/or legally privileged information and is intended only to be read or used by the addressee. If you are not the intended addressee, any use, distribution, disclosure or copying of this email is strictly prohibited. Confidentiality and legal privilege attached to this email (including any attachments) are not waived or lost by reason of its mistaken delivery to you. If you have received this email in error, please delete it and notify us immediately by telephone or email. Peter MacCallum Cancer Centre provides no guarantee that this transmission is free of virus or that it has not been intercepted or altered and will not be liable for any delay in its receipt.

[JJ Gao]

Hi Chris,

This is a feature that was requested earlier: https://github.com/cBioPortal/cbioportal/discussions/9707. Before we implement the AND logic, there is no simple way to do it on the website. One option is to download the data (the "Type of Genetic Alterations Across All Samples" table) in the Download tab and use a spreadsheet to sort and figure out the co-mutated samples. You can then use the "Custom Selection" tool to select these samples and analyze their cancer types, etc.

-JJ

--
You received this message because you are subscribed to the Google Groups "cBioPortal for Cancer Genomics Discussion Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email to cbioportal+...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/cbioportal/SY4P282MB1129365BFDD62B77ADD4A344E57C9%40SY4P282MB1129.AUSP282.PROD.OUTLOOK.COM.