Matched_Norm_Sample_Barcode all NA

[Qierra Brockman]

I'm trying to access the matched normal samples used to filter out somatic variants (MSK-IMPACT). When I use cBioPortalData there are fields for the matched normal and normal alleles, but all the fields are empty. When I look on the API I can see the matched samples exist. How can access them via the API or cBioDataPack?

Thank you!

Qierra

[Anu Vijay]

Hi Qierra,

Thanks for reaching out!

The matched normal status can be pulled from the SOMATIC_STATUS clinical sample attribute. That field indicates whether a sample was sequenced with matched normal information for somatic variant filtering.

best,
Baby Anusha.

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