Uploading NCI PDMR data for cBioPortal

[Das, Biswajit (NIH/NCI) [C]]

Hello,

 

Our manuscript for NCI Patient-Derived Models Repository (PDMR) (https://pdmr.cancer.gov/) is under review. We would like to upload the dataset to the public instance of cBioPortal (www.cbioportal.org).

 

Please let us know the process.

 

Thank you,

 

Bishu Das

 

 

________________________________________________________

Biswajit Das, Ph.D. [C]

Associate Director (Scientist V), Molecular Characterization Laboratory (MoCha)

Clinical Research Program (CRP)

Frederick National Laboratory for Cancer Research

National Institutes of Health

Building 459, Room 108

Office: 301-846-5056 

Cell: 240-344-7300

biswaj...@nih.gov

 

 

 

 

 

[Priti Kumari]

Hi Bishu,

We are happy to help you upload the data in cBioPortal.

Are you able to format the data in the formats specific here: https://docs.cbioportal.org/file-formats/

Thank you,

Priti

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[Das, Biswajit (NIH/NCI) [C]]

Hi Priti,

 

Thank you for the reply. We have an internal instance of cBioportal here at FNLCR. I have copied additional team members here who are familiar with the format you described.

 

Please let us know the next steps.

 

Thank you,

 

Bishu

 

 

 

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[Chang, Ting-Chia (NIH/NCI) [C]]

Hi Bishu and Priti,

 

Yes, we have the dataset for PDMR manuscript formatted in the same format as the public cBioPortal. Could you let me know how I can upload or transfer the entire dataset to you?

 

 

Best,

TC

Ting-Chia Chang [c]

Analyst III, BIOINFORMATICS

Molecular Characterization Laboratory (MoCha)

Clinical Research Directorate (CRD)

Frederick National Laboratory for Cancer Research

Building 434, Room 5C

Office: 301-846-6251

ting-ch...@nih.gov

[Ritika Kundra]

Hello,

We will reach out to separately to set up the transfer. 

Thanks

Ritika 

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[Das, Biswajit (NIH/NCI) [C]]

Thank you.