Groups
Conversations
All groups and messages
Send feedback to Google
Help
Training
Sign in
Groups
cBioPortal for Cancer Genomics Discussion Group
Conversations
Labels
About
cBioPortal for Cancer Genomics Discussion Group
Contact owners and managers
1–30 of 4997
This mailing list is for questions that are related to
cbioportal.org
. In order to filter out spams, every message is moderated. If you don't see your message posted immediately, it will be moderated and posted later.
Mark all as read
Report group
0 selected
Leila Kamkar
,
jagn...@gmail.com
3
7:19 AM
Nginx proxy setting in Version6
Hi Jag, Many many thanks for your reply. I set the setting as you mentioned. But it still does not
unread,
Nginx proxy setting in Version6
Hi Jag, Many many thanks for your reply. I set the setting as you mentioned. But it still does not
7:19 AM
Rafael Sainz
,
jagn...@gmail.com
2
Dec 4
Need to query all studies -13 gene panel
Hi Rafael Sainz It is possible to create a virtual study combining all the studies of interest.
unread,
Need to query all studies -13 gene panel
Hi Rafael Sainz It is possible to create a virtual study combining all the studies of interest.
Dec 4
Charles Olwal
,
jagn...@gmail.com
2
Dec 4
Problems loading a study
Hi Charles, In the link below, all the parameters to the meta import script are given. https://docs.
unread,
Problems loading a study
Hi Charles, In the link below, all the parameters to the meta import script are given. https://docs.
Dec 4
Andi L.
,
Nikolaus Schultz
5
Dec 4
MSK-CHORD pre-entry treatment
Thanks again, for now everything is clear! Nikolaus Schultz schrieb am Montag, 2. Dezember 2024 um 17
unread,
Completed
MSK-CHORD pre-entry treatment
Thanks again, for now everything is clear! Nikolaus Schultz schrieb am Montag, 2. Dezember 2024 um 17
Dec 4
Charles Olwal
,
Pieter Lukasse
2
Dec 4
HttpError 401
Hi Charles, Please see https://github.com/cBioPortal/cbioportal/blob/master/docs/Using-the-dataset-
unread,
HttpError 401
Hi Charles, Please see https://github.com/cBioPortal/cbioportal/blob/master/docs/Using-the-dataset-
Dec 4
Celine Kurniawan
,
Pieter Lukasse
3
Dec 3
Clinvar annotation
Hi Pieter, Sorry for the late reply and not mentioning earlier that I used my own mutation data to
unread,
Clinvar annotation
Hi Pieter, Sorry for the late reply and not mentioning earlier that I used my own mutation data to
Dec 3
SHI, YUFEI
,
Nikolaus Schultz
2
Dec 2
RE: Aneuploidy Score
Apologies foe the delay. We have a ticket for this now and hope to get this done soon. In the
unread,
RE: Aneuploidy Score
Apologies foe the delay. We have a ticket for this now and hope to get this done soon. In the
Dec 2
Alan Mackay
,
jagn...@gmail.com
2
Dec 2
Submitting datasets to pedcBioPortal
Hi Alan, Congratulations on your publication. For cBioPortal.org, you can see the File format link so
unread,
Submitting datasets to pedcBioPortal
Hi Alan, Congratulations on your publication. For cBioPortal.org, you can see the File format link so
Dec 2
J. N
,
jagn...@gmail.com
4
Nov 29
What is "mixed" meaning in the patient CMS status?
Hi JN, The CMS is the Consensus Molecular Subtype from https://www.nature.com/articles/nm.3967. From
unread,
What is "mixed" meaning in the patient CMS status?
Hi JN, The CMS is the Consensus Molecular Subtype from https://www.nature.com/articles/nm.3967. From
Nov 29
Jolien van Hooff
,
Ruslan Forostianov
3
Nov 28
Discrepancy mutations data file and patient view/clinical data
Hi, This makes a lot of sense, thank you! Best wishes, Jolien On Wednesday, November 27, 2024 at 3:15
unread,
Completed
Discrepancy mutations data file and patient view/clinical data
Hi, This makes a lot of sense, thank you! Best wishes, Jolien On Wednesday, November 27, 2024 at 3:15
Nov 28
Monika Rosochowicz
,
Pieter Lukasse
2
Nov 27
Trouble getting data from the BRCA TCGA PanAtlas cBioPortal study
Hi Monika, I checked the same UI and it seems you have found a bug. Thanks for reporting! I've
unread,
Completed
Trouble getting data from the BRCA TCGA PanAtlas cBioPortal study
Hi Monika, I checked the same UI and it seems you have found a bug. Thanks for reporting! I've
Nov 27
Thomas Pauli
,
Pieter Lukasse
5
Nov 27
display namespaces in CNV and SV table per default
Fantastic! Thanks for confirming the solution of removing quotes works :) Best, Pieter PS: If you
unread,
Completed
display namespaces in CNV and SV table per default
Fantastic! Thanks for confirming the solution of removing quotes works :) Best, Pieter PS: If you
Nov 27
Ruslan Forostianov
Nov 26
Re: How to logout whit Microsoft
Hi Xinxin, Do you have access to the server logs? If so, it might be helpful to enable verbose
unread,
Re: How to logout whit Microsoft
Hi Xinxin, Do you have access to the server logs? If so, it might be helpful to enable verbose
Nov 26
Ahmed Al Sharie
,
Aaron L
5
Nov 25
Inquiry
Yea ----------------------------------------------------------------- Ahmed H. Al Sharie, MD PGY-1
unread,
Inquiry
Yea ----------------------------------------------------------------- Ahmed H. Al Sharie, MD PGY-1
Nov 25
Niklas de Andrade Krätzig
,
Aaron L
5
Nov 21
Overview grouping error: Unsuccessful HTTP response (mouse cbio)
Glad to hear it's fixed Niklas! On Thu, Nov 21, 2024 at 12:21 PM Niklas de Andrade Krätzig <
unread,
Overview grouping error: Unsuccessful HTTP response (mouse cbio)
Glad to hear it's fixed Niklas! On Thu, Nov 21, 2024 at 12:21 PM Niklas de Andrade Krätzig <
Nov 21
xinxin chen
,
Ruslan Forostianov
2
Nov 21
Import data with Docker has error
Hello Xinxin, Have you imported gene sets prior to importing the study_es_0 study? This study
unread,
Import data with Docker has error
Hello Xinxin, Have you imported gene sets prior to importing the study_es_0 study? This study
Nov 21
Dr. Avrajit Chakraborty
,
de Bruijn, Ino
3
Nov 21
which Annotatio tool _oncoprint
Hi Ino, Thanks for your mail. I understand the point you highlighted. Regards On Wed, Nov 20, 2024 at
unread,
Completed
which Annotatio tool _oncoprint
Hi Ino, Thanks for your mail. I understand the point you highlighted. Regards On Wed, Nov 20, 2024 at
Nov 21
Miranda Qing
, …
de Bruijn, Ino
4
Nov 20
cBioPortal user reported error
Thanks Olivia! Could you describe the steps that led you to this error? Thanks so much! Ino From:
unread,
Completed
cBioPortal user reported error
Thanks Olivia! Could you describe the steps that led you to this error? Thanks so much! Ino From:
Nov 20
MOHSEN SHEYKHHASAN
,
de Bruijn, Ino
2
Nov 20
Inquiry About Protein Expression Data on cBioPortal
Hi Mohsen, Thanks for reaching out! For protein expression there is RPPA and Protein Mass Spec (see
unread,
Completed
Inquiry About Protein Expression Data on cBioPortal
Hi Mohsen, Thanks for reaching out! For protein expression there is RPPA and Protein Mass Spec (see
Nov 20
瑛
,
de Bruijn, Ino
2
Nov 20
Hi, Thanks for sharing the error with us! The link currently seems to work. Could you share the steps
unread,
Completed
Hi, Thanks for sharing the error with us! The link currently seems to work. Could you share the steps
Nov 20
Hema Venugopal
, …
JJ Gao
4
Nov 16
Question about open PBTA database
Dear Zeynep and JianJiong, Thank you so much for your swift help! I will approach the authors of the
unread,
Completed
Question about open PBTA database
Dear Zeynep and JianJiong, Thank you so much for your swift help! I will approach the authors of the
Nov 16
Efstathios Vlachavas
,
Zeynep Karagöz
2
Nov 13
License terms and putative commercial usage of downloading specific gene-sets signatures through the cBioPortal web portal
Hi Efstathios, Thanks for reaching out to us! The gene lists available at the query view can be found
unread,
Completed
License terms and putative commercial usage of downloading specific gene-sets signatures through the cBioPortal web portal
Hi Efstathios, Thanks for reaching out to us! The gene lists available at the query view can be found
Nov 13
Mariana Gomes Da Silva Araujo
, …
JJ Gao
6
Nov 13
Data discrepancies between API client and web portal - TCGA
Hello Nikki, Thank you again for the answer. I do not understand what you mean by “not shown in
unread,
Data discrepancies between API client and web portal - TCGA
Hello Nikki, Thank you again for the answer. I do not understand what you mean by “not shown in
Nov 13
Brown, Miguel A
,
Yura Grabovska
3
Nov 13
Re: [External]Chasing status of a study dataset
Hi Miguel, Thank you for getting back and for taking a look. It isn't the 2017 one unfortunately
unread,
Completed
Re: [External]Chasing status of a study dataset
Hi Miguel, Thank you for getting back and for taking a look. It isn't the 2017 one unfortunately
Nov 13
T Nishanth
,
Zeynep Karagöz
3
Nov 13
deep sequencing
Hi T Nishanth, I would like to add to my previous reply that if you have used deep sequencing
unread,
deep sequencing
Hi T Nishanth, I would like to add to my previous reply that if you have used deep sequencing
Nov 13
J. N
,
Jessica Singh
2
Nov 13
How can I get 21 genes mutations situation and MSI, cancer sites from 5000 patients?
Hi Jiahui, Thank you for reaching out! Please let me know if you're working on a public
unread,
How can I get 21 genes mutations situation and MSI, cancer sites from 5000 patients?
Hi Jiahui, Thank you for reaching out! Please let me know if you're working on a public
Nov 13
Charles Olwal
,
JJ Gao
3
Nov 12
Problems loading datasets in local cbioportal
Hi Charles, Without looking at your data, it would be hard for us to figure out the issue. I can
unread,
Problems loading datasets in local cbioportal
Hi Charles, Without looking at your data, it would be hard for us to figure out the issue. I can
Nov 12
Sanjana Sankar
,
Zeynep Karagöz
3
Nov 10
CBio Portal- Correlation Analysis
Hi Ritika, Hope you are doing well! Just following up on my request regarding my single gene vs all
unread,
CBio Portal- Correlation Analysis
Hi Ritika, Hope you are doing well! Just following up on my request regarding my single gene vs all
Nov 10
Maria
,
Gaofei Zhao
3
Nov 8
docker compose up error Database not available yet (first time can take a few minutes to load seed database).
Hello Gaofei, Thank you for your response. I have checked all of these things and have installed
unread,
docker compose up error Database not available yet (first time can take a few minutes to load seed database).
Hello Gaofei, Thank you for your response. I have checked all of these things and have installed
Nov 8
Joseph Celidonio
, …
Tali Mazor
36
Nov 8
Variable Definition Confirmation
Hi Joe, There are a few ways you can do this, depending on exactly what you want. If you want samples
unread,
Variable Definition Confirmation
Hi Joe, There are a few ways you can do this, depending on exactly what you want. If you want samples
Nov 8