Groups

cBioPortal for Cancer Genomics Discussion Group

1–30 of 5309

This mailing list is for questions that are related to cbioportal.org. In order to filter out spams, every message is moderated. If you don't see your message posted immediately, it will be moderated and posted later.

0 selected

6:58 PM

GSoC Inquiry - Data Science and Analytical Backend

Hi cBioPortal Team, My name is Anant Jamuar and I am a college student planning to apply for GSoC

unread,

GSoC Inquiry - Data Science and Analytical Backend

Hi cBioPortal Team, My name is Anant Jamuar and I am a college student planning to apply for GSoC

6:58 PM

6:58 PM

Mutation Mapper - no lollipop

Hi! I'm trying to use mutation mapper to visualize some variants attached below. When I copy and

unread,

Mutation Mapper - no lollipop

Hi! I'm trying to use mutation mapper to visualize some variants attached below. When I copy and

6:58 PM

Emilia Manko, … Anu Vijay5

4:37 PM

Access to HCMI dataset

Hi Emilia, Hope you are doing well! Thank you for following up. At the moment, the associated paper

unread,

Access to HCMI dataset

Hi Emilia, Hope you are doing well! Thank you for following up. At the moment, the associated paper

4:37 PM

Yaiza Mariela Jung Garcia, Benjamin Gross2

1:32 PM

cBioPortal user reported error

Hi Yaiza, Thank you for your email. Can you provide me with the query you were attempting to make? I

unread,

cBioPortal user reported error

Hi Yaiza, Thank you for your email. Can you provide me with the query you were attempting to make? I

1:32 PM

Hannan Wong, Benjamin Gross2

Jan 24

Queries regarding GISTIC output for Pancancer Atlas

Hi Hannan, Thank you for your email. The data_cna.txt files for TCGA PanCancer Atlas studies in

unread,

Queries regarding GISTIC output for Pancancer Atlas

Hi Hannan, Thank you for your email. The data_cna.txt files for TCGA PanCancer Atlas studies in

Jan 24

Setlem, Rohit, M.S., Benjamin Gross2

Jan 24

cBioPortal Import Error: Duplicate SV/Fusion Entries

Hi Rohit, Thank you for the email. validateData.py is the code that is generating this error. The

unread,

cBioPortal Import Error: Duplicate SV/Fusion Entries

Hi Rohit, Thank you for the email. validateData.py is the code that is generating this error. The

Jan 24

Adityaraj Dhuria, Benjamin Gross2

Jan 24

nquiry regarding esophageal cancer cohorts with histopathology data for TP53-WSI research

Hi Aditya, Thank you for your email. Unfortunately, we do not track which data modalities are

unread,

nquiry regarding esophageal cancer cohorts with histopathology data for TP53-WSI research

Hi Aditya, Thank you for your email. Unfortunately, we do not track which data modalities are

Jan 24

Noah Johannessen, Benjamin Gross2

Jan 24

Quick question from a CS student at TAMU

Hi Noah, Thanks for your email. It's unclear from your email what you are asking. As you point

unread,

Quick question from a CS student at TAMU

Hi Noah, Thanks for your email. It's unclear from your email what you are asking. As you point

Jan 24

Manini, Nicholas, … Tali Mazor4

Jan 21

Sample Information

Hi Nick, I suspect you were looking at https://cbiodfci.org/ where you can access data from the DFCI

unread,

Sample Information

Hi Nick, I suspect you were looking at https://cbiodfci.org/ where you can access data from the DFCI

Jan 21

Alkaissi, Hussam (NIH/NIDDK) [E], … Kundra, Ritika10

Jan 21

TCGA-PCPG Cohort

Perfect, I look forward to it! Best regards Hussam Alkaissi, MD MS Endocrinology Clinical Fellow (NIH

unread,

TCGA-PCPG Cohort

Perfect, I look forward to it! Best regards Hussam Alkaissi, MD MS Endocrinology Clinical Fellow (NIH

Jan 21

Matthew Morelli, Prasanna Jagannathan2

Jan 20

Duplicate Samples

Hi Matthew Please reach out to Ped cBioPortal team via the email pedcbio...@d3b.center Please

unread,

Duplicate Samples

Hi Matthew Please reach out to Ped cBioPortal team via the email pedcbio...@d3b.center Please

Jan 20

Rachel Marcone, jagn...@gmail.com2

Jan 15

Question on a patient

Hi Rachel, Usually this means that the patient never followed up after the initial sample acquisition

unread,

Question on a patient

Hi Rachel, Usually this means that the patient never followed up after the initial sample acquisition

Jan 15

Jan 14

Hi,Cbioportal I would like to test the cBioPubChat, Please give me access. Thanks! Best, Quan LI, Ph.

unread,

Hi,Cbioportal I would like to test the cBioPubChat, Please give me access. Thanks! Best, Quan LI, Ph.

Jan 14

Kristina Hanspers, Ruslan Forostianov2

Jan 14

Potential GSoC cBioPortal project

Hi Kristina, I'll spread the word among potential candidates, thanks! Kind regards, Ruslan On

unread,

Potential GSoC cBioPortal project

Hi Kristina, I'll spread the word among potential candidates, thanks! Kind regards, Ruslan On

Jan 14

Amit Mukherjee, Ruslan Forostianov2

Jan 14

Question on AI GuardRails

Hi Amit, Thank you for reaching out and for your willingness to help improve the chat system. Could

unread,

Question on AI GuardRails

Hi Amit, Thank you for reaching out and for your willingness to help improve the chat system. Could

Jan 14

Ellie Carr, Ruslan Forostianov4

Jan 8

cBioPortal user reported error

how did you get to the original link? maybe you can provide more details? On Thursday, January 8,

unread,

cBioPortal user reported error

how did you get to the original link? maybe you can provide more details? On Thursday, January 8,

Jan 8

Belz, Chris, Ruslan Forostianov2

Jan 7

Overlapping Data not flagged in Medulloblastoma Studies

Hi Chris, Thank you for reporting this and for sharing the details. We will investigate this issue

unread,

Overlapping Data not flagged in Medulloblastoma Studies

Hi Chris, Thank you for reporting this and for sharing the details. We will investigate this issue

Jan 7

Laura Parrilla Monge, Aaron L4

Jan 6

Create a group by selecting patients by ID

Hi Laura, is it possible you didnt select the "By patient ID" radio button (see screenshot)

unread,

Create a group by selecting patients by ID

Hi Laura, is it possible you didnt select the "By patient ID" radio button (see screenshot)

Jan 6

Ricardo Tiecher, Aaron L3

Jan 3

Batch download of patient timeline data

Thanks for you answer, Aaron! It worked perfectly. Happy 2026! Em segunda-feira, 29 de dezembro de

unread,

Batch download of patient timeline data

Thanks for you answer, Aaron! It worked perfectly. Happy 2026! Em segunda-feira, 29 de dezembro de

Jan 3

Nives Pećina-Šlaus, … Nikolaus Schultz3

12/30/25

question on data

Hi Nives, You can also download data directly from our Data Hub at: https://github.com/cBioPortal/

unread,

question on data

Hi Nives, You can also download data directly from our Data Hub at: https://github.com/cBioPortal/

12/30/25

Jitender Singh, Tim Kuijpers2

12/30/25

Clarification on Data Source and Citation for TARGET Datasets Used from cBioPortal

Dear Jitender, Please have a look at the following website: GDC - Using TARGET data. There is a

unread,

Clarification on Data Source and Citation for TARGET Datasets Used from cBioPortal

Dear Jitender, Please have a look at the following website: GDC - Using TARGET data. There is a

12/30/25

Shayna Simonstein, Tali Mazor3

12/23/25

Cross TCGA Pan Cancer Atlas study expression analysis in private cBioPortal

Thanks, Tali!! On Friday, December 19, 2025 at 4:47:43 PM UTC-5 Tali Mazor wrote: Hi Shayna, By

unread,

Cross TCGA Pan Cancer Atlas study expression analysis in private cBioPortal

Thanks, Tali!! On Friday, December 19, 2025 at 4:47:43 PM UTC-5 Tali Mazor wrote: Hi Shayna, By

12/23/25

Nergz Seerwan, Aaron L2

12/22/25

cBioPortal user reported error

Thanks Nergz, Could you send me the url where you are seeing the problem? Are you logged in by the

unread,

cBioPortal user reported error

Thanks Nergz, Could you send me the url where you are seeing the problem? Are you logged in by the

12/22/25

John, … Gaofei Zhao9

12/22/25

Tissue Sample Image files for local cbio instance (?)

Hi JJ, Thank you very much.....You have been very helpful. Regards, John Francis On Friday, December

unread,

Tissue Sample Image files for local cbio instance (?)

Hi JJ, Thank you very much.....You have been very helpful. Regards, John Francis On Friday, December

12/22/25

Alireza Samiei, … Jeffrey Tsao12

12/18/25

? regarding SV feature on cBioportal

Thanks all for confirming. Jeff On Thu, Dec 18, 2025 at 9:03 AM Popoola, Jumi <jumi.popoola@aacr.

unread,

? regarding SV feature on cBioportal

Thanks all for confirming. Jeff On Thu, Dec 18, 2025 at 9:03 AM Popoola, Jumi <jumi.popoola@aacr.

12/18/25

Sreekumar, Nitin, Gaofei Zhao2

12/15/25

cBioportal API issue

Hi Nitin, Thank you for reporting this issue. I have filed a ticket for it here. We will look into

unread,

cBioportal API issue

Hi Nitin, Thank you for reporting this issue. I have filed a ticket for it here. We will look into

12/15/25

Ahsen Tahir, Gaofei Zhao2

12/15/25

Inquiry Regarding Availability of cBioPortal API Tokens

Hi Ahsen, Thanks for reaching out. API tokens are still supported on authorized cBioPortal instances.

unread,

Inquiry Regarding Availability of cBioPortal API Tokens

Hi Ahsen, Thanks for reaching out. API tokens are still supported on authorized cBioPortal instances.

12/15/25

Jun mei Hu Frisk, JJ Gao2

12/15/25

a question about figure on "Survival" based on mRNA expression

Hi Jun Mei, Thanks for reaching out to me. Both use the Kaplan–Meier method, a standard way to plot

unread,

a question about figure on "Survival" based on mRNA expression

Hi Jun Mei, Thanks for reaching out to me. Both use the Kaplan–Meier method, a standard way to plot

12/15/25

Carlos Espinosa, … Sachin Kumar3

12/13/25

Unable to deploy version 5 of cbioportal

I can help if you need On Thu, Dec 11, 2025 at 9:56 AM Gaofei Zhao <zhaoga...@gmail.com>

unread,

Unable to deploy version 5 of cbioportal

I can help if you need On Thu, Dec 11, 2025 at 9:56 AM Gaofei Zhao <zhaoga...@gmail.com>

12/13/25

Aaron Gmail, de Bruijn, Ino2

12/11/25

Thanks for reaching out, Aaron! Appreciate your offer to help test the chat agent! The chat interface

unread,

Thanks for reaching out, Aaron! Appreciate your offer to help test the chat agent! The chat interface

12/11/25

Search

Clear search

Close search

Google apps

Main menu