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cBioPortal for Cancer Genomics Discussion Group

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Mark Paris, JJ Gao4

1:32 PM

survival analysis

You're welcome. Glad that it was helpful. On Fri, Jun 5, 2026 at 12:50 PM Mark Paris <parismj@

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survival analysis

You're welcome. Glad that it was helpful. On Fri, Jun 5, 2026 at 12:50 PM Mark Paris <parismj@

1:32 PM

Lewis Schendowich, Tali Mazor2

11:31 AM

cbioportal question

Hi Lewis, You can find information about cBioPortal in our documentation (https://docs.cbioportal.org

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cbioportal question

Hi Lewis, You can find information about cBioPortal in our documentation (https://docs.cbioportal.org

11:31 AM

Vijayaraghavan, Shoba

2:35 AM

RE: AACR Project GENIE Coordinating Center - Data Access Request

Hi, Thanks- let us set up a call on Tuesday. We would like to be able to access the database using an

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RE: AACR Project GENIE Coordinating Center - Data Access Request

Hi, Thanks- let us set up a call on Tuesday. We would like to be able to access the database using an

2:35 AM

Deeya Khamesra, JJ Gao2

Jun 4

Hi Deeya, Thanks for reporting this to us. The issue was cause by the fact that this study does not

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Hi Deeya, Thanks for reporting this to us. The issue was cause by the fact that this study does not

Jun 4

Michael Lisby, JJ Gao2

Jun 4

Help for cBioPortal

Hi Michael, Sorry for the late reply. HRD data is sparse in cBioPortal. One option is to look at

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Help for cBioPortal

Hi Michael, Sorry for the late reply. HRD data is sparse in cBioPortal. One option is to look at

Jun 4

Jason White, Ramya Madupuri2

Jun 4

Access to mutation data

Hi Jason, There are two ways to access the data. The instructions are available in the Datahub Readme

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Access to mutation data

Hi Jason, There are two ways to access the data. The instructions are available in the Datahub Readme

Jun 4

permiss...@copyright.com, JJ Gao2

Jun 3

Document Request, 25874518

Dear Anda, Thanks for reaching out to us. Please check out our copyright permission guideline here:

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Document Request, 25874518

Dear Anda, Thanks for reaching out to us. Please check out our copyright permission guideline here:

Jun 3

Bingqing Xie, JJ Gao2

Jun 1

Inquiry about the beta version

Hi Bing, Thank you for your interest in the natural language query tool in cBioPortal. I'll talk

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Inquiry about the beta version

Hi Bing, Thank you for your interest in the natural language query tool in cBioPortal. I'll talk

Jun 1

Miu ki Yip, … Ramya Madupuri4

Jun 1

cBioPortal Datahub Public Dataset Load Into Database Issues

Hi Miu, Thank you for bringing this to our attention. We looked into the issues with the '

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cBioPortal Datahub Public Dataset Load Into Database Issues

Hi Miu, Thank you for bringing this to our attention. We looked into the issues with the '

Jun 1

James.Salter, JJ Gao2

Jun 1

Image Licencing Request (590957)

Hi, You are free to use figures from cBioPortal in your educational material, there is no copyright

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Image Licencing Request (590957)

Hi, You are free to use figures from cBioPortal in your educational material, there is no copyright

Jun 1

Matteo Palermo, Nikolaus Schultz2

May 25

Clarification on cBioPortal GENIE dataset

Dear Matteo, Unfortunately we do not have any additional information about these cases from the GENIE

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Clarification on cBioPortal GENIE dataset

Dear Matteo, Unfortunately we do not have any additional information about these cases from the GENIE

May 25

Liu, Dongyan, Nikolaus Schultz2

May 25

Inquiry About cBioPortal Support Services

Dear Dongyan, Thank you for reaching out. We are aware of two companies that provide support around

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Inquiry About cBioPortal Support Services

Dear Dongyan, Thank you for reaching out. We are aware of two companies that provide support around

May 25

Vijayaraghavan, Shoba, Nikolaus Schultz2

May 25

Attn: AACR Project GENIE Coordinating Center - Data Access Request

Hi, The terms of access for AACR Project GENIE data are described in this document. As long as you

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Attn: AACR Project GENIE Coordinating Center - Data Access Request

Hi, The terms of access for AACR Project GENIE data are described in this document. As long as you

May 25

Oliver Stolpe, … de Bruijn, Ino5

May 24

cBioPortal v6.4.1 and SAML

Hi Elias, Apologies about the delay on this. Just merged it Thank you again for making the fixes to

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cBioPortal v6.4.1 and SAML

Hi Elias, Apologies about the delay on this. Just merged it Thank you again for making the fixes to

May 24

elias, … Nikolaus Schultz4

May 24

Order of Columns in Mutation, Copy-Number and Structural Variant Tables

Hi Elias, This sounds like a good idea and I think we would integrate your feature if designed and

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Order of Columns in Mutation, Copy-Number and Structural Variant Tables

Hi Elias, This sounds like a good idea and I think we would integrate your feature if designed and

May 24

Balanean, Alexandrina, Nikolaus Schultz3

May 22

IRB review requirement

That's what I thought, just wanted to confirm. Much appreciated! Thanks, Alexandrina Balanean,

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IRB review requirement

That's what I thought, just wanted to confirm. Much appreciated! Thanks, Alexandrina Balanean,

May 22

WARD, Rebecca (THE CHRISTIE NHS FOUNDATION TRUST), Aaron L3

May 21

LCNEC in cbioportal

Sorry, to use the chatbot yourself, you can go to chat.cbioportal.org and log in with a gmail account

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LCNEC in cbioportal

Sorry, to use the chatbot yourself, you can go to chat.cbioportal.org and log in with a gmail account

May 21

fairs...@oerc.ox.ac.uk, de Bruijn, Ino2

May 15

[FAIRsharing] Birthday of your FAIRsharing record

Thanks for reaching out! I sent an ownership request. Will review the record Best wishes, Ino From:

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[FAIRsharing] Birthday of your FAIRsharing record

Thanks for reaching out! I sent an ownership request. Will review the record Best wishes, Ino From:

May 15

HUNT, Johanna (BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST), … Benjamin Gross5

May 15

Trouble accessing AACR Project Genie

Hi Johanna, I do not see an entry for you in the AACR Project GENIE registration form. If you did

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Trouble accessing AACR Project Genie

Hi Johanna, I do not see an entry for you in the AACR Project GENIE registration form. If you did

May 15

Brihn, Lesil, Tali Mazor2

May 15

cBioPortal VAF histograms

Hi Lesil, Thank you for the kind words. The VAF histogram is still available, but it has been moved

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cBioPortal VAF histograms

Hi Lesil, Thank you for the kind words. The VAF histogram is still available, but it has been moved

May 15

Alexandre Fittipaldi, Benjamin Gross2

May 15

Request to use cBioPortal API for open non-commercial research platform

Hi Alex, Thank you for your email and your interest in connecting the cBioPortal API to your MedC82

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Request to use cBioPortal API for open non-commercial research platform

Hi Alex, Thank you for your email and your interest in connecting the cBioPortal API to your MedC82

May 15

Rebecca Sansale, Aaron L3

May 13

error when loading study

hi aaron-- sorry, ive been in contact with ino and gaofei on slack. I am the maintainer of this

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error when loading study

hi aaron-- sorry, ive been in contact with ino and gaofei on slack. I am the maintainer of this

May 13

Turski, Michelle, … Aedin.Culhane13

May 13

Request for VPAT for cBioPortal

https://pandoc.org/. will convert file types including markdown to almost anything else From:

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Request for VPAT for cBioPortal

https://pandoc.org/. will convert file types including markdown to almost anything else From:

May 13

James.Salter, JJ Gao2

May 12

Image Licencing Request (590958)

Hi, You are free to use figures from cBioPortal in your educational material, there is no copyright

unread,

Image Licencing Request (590958)

Hi, You are free to use figures from cBioPortal in your educational material, there is no copyright

May 12

Alyona Ivanova, Jessica Singh5

May 8

Uploading public data

Hi Jessica, Just following up on my previous message. Could you please provide some guidance on how

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Uploading public data

Hi Jessica, Just following up on my previous message. Could you please provide some guidance on how

May 8

Chua Eng Wee, Ramya Madupuri2

May 6

Inquiry - Mitochondrial DNA datasets

Hi Eng Wee, Thank you for reaching out. This isn't a glitch, mitochondrial DNA-encoded genes (

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Inquiry - Mitochondrial DNA datasets

Hi Eng Wee, Thank you for reaching out. This isn't a glitch, mitochondrial DNA-encoded genes (

May 6

Balaji Krishnamachary, Guizela Huelsz Prince2

May 6

accession details or cohort identifiers

Hi Balaji, Within cBioPortal, cohorts or studies can be uniquely identified by the study ID, which

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accession details or cohort identifiers

Hi Balaji, Within cBioPortal, cohorts or studies can be uniquely identified by the study ID, which

May 6

Kyle Beauchamp, Anu Vijay3

Apr 30

Missing Receptor Status in Breast Dataset

Awesome, thank you! On Thu, Apr 30, 2026 at 9:57 AM Anu Vijay <anuvi...@gmail.com> wrote: Hi

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Missing Receptor Status in Breast Dataset

Awesome, thank you! On Thu, Apr 30, 2026 at 9:57 AM Anu Vijay <anuvi...@gmail.com> wrote: Hi

Apr 30

Qierra Brockman, Anu Vijay2

Apr 30

Matched_Norm_Sample_Barcode all NA

Hi Qierra, Thanks for reaching out! The matched normal status can be pulled from the SOMATIC_STATUS

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Matched_Norm_Sample_Barcode all NA

Hi Qierra, Thanks for reaching out! The matched normal status can be pulled from the SOMATIC_STATUS

Apr 30

Mestrallet, Guillaume, … dssa...@niser.ac.in9

Apr 23

Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

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Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

Apr 23

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