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cBioPortal for Cancer Genomics Discussion Group
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This mailing list is for questions that are related to
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Steve Neuhauser
,
de Bruijn, Ino
3
Aug 24
Organization of studies into groups on query / home page
Glad you got it to work! Let us know if there's anything else we can help with Best wishes, Ino
unread,
Organization of studies into groups on query / home page
Glad you got it to work! Let us know if there's anything else we can help with Best wishes, Ino
Aug 24
Anurag Saxena
,
lisman...@gmail.com
2
Aug 24
ClickHouse user authorization lookup fails when OAuth2 email claim contains uppercase characters
ok thanks! will look today. On Thursday, August 20, 2026 at 9:43:59 AM UTC-4 sax...@ccf.org wrote:
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ClickHouse user authorization lookup fails when OAuth2 email claim contains uppercase characters
ok thanks! will look today. On Thursday, August 20, 2026 at 9:43:59 AM UTC-4 sax...@ccf.org wrote:
Aug 24
John Reber
,
Gaofei Zhao
3
Aug 24
Initializing external database
Reseeded external database, ensuring schema, seed and clickhouse were loaded in that order. When
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Initializing external database
Reseeded external database, ensuring schema, seed and clickhouse were loaded in that order. When
Aug 24
Anurag Saxena
, …
Nasir, Zain-Ul-Abideen
6
Aug 24
Clickhouse dumps for cbioportal maintainers
Hi Anurag, Thanks for pointing out the inconsistencies. I'll get back to you soon with a fix and
unread,
Clickhouse dumps for cbioportal maintainers
Hi Anurag, Thanks for pointing out the inconsistencies. I'll get back to you soon with a fix and
Aug 24
Michal Inbar
,
Ruslan Forostianov
2
Aug 24
TMB plot display and Pan-Cancer study grouping
Dear Michael, Thank you for your question. For the TMB plot, please check the data type of TMB_SCORE
unread,
TMB plot display and Pan-Cancer study grouping
Dear Michael, Thank you for your question. For the TMB plot, please check the data type of TMB_SCORE
Aug 24
裴斐
Aug 23
Request for permission to use cBioPortal logo
Dear cBioPortal team, I am Fei Pei from Peking University Health Science Center. I would like to
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Request for permission to use cBioPortal logo
Dear cBioPortal team, I am Fei Pei from Peking University Health Science Center. I would like to
Aug 23
Dilini Gunatilake
,
Aaron L
3
Aug 21
Assign custom colours to groups
the color picker issue should be fixed now On Fri, Aug 21, 2026 at 3:27 PM lisman...@gmail.com <
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Assign custom colours to groups
the color picker issue should be fixed now On Fri, Aug 21, 2026 at 3:27 PM lisman...@gmail.com <
Aug 21
Jake Reed
,
Ritika Kundra
3
Aug 19
MSKCC cBioPortal Question
Hello Ritika, The study is a collection of all of Alana Welm's Patient Derived Models (xenografts
unread,
MSKCC cBioPortal Question
Hello Ritika, The study is a collection of all of Alana Welm's Patient Derived Models (xenografts
Aug 19
Nicholas Bateman
,
Ramya Madupuri
2
Aug 19
Incorporating APOLLO into the cbioportal.org resource
Hi Nick, Thanks for reaching out and for your interest in contributing the APOLLO studies to
unread,
Incorporating APOLLO into the cbioportal.org resource
Hi Nick, Thanks for reaching out and for your interest in contributing the APOLLO studies to
Aug 19
Zenilman, Erin
, …
Pieter Lukasse
4
Aug 18
PedcBioPortal access
Hi Erin, I'm sorry to hear you are having issues with login and contacting support. I will find
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PedcBioPortal access
Hi Erin, I'm sorry to hear you are having issues with login and contacting support. I will find
Aug 18
John Reber
,
de Bruijn, Ino
3
Aug 14
jar: command not found
Thanks for the update. I was doing an apt-get install jdk in the entrypoint.sh, but that was playing
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jar: command not found
Thanks for the update. I was doing an apt-get install jdk in the entrypoint.sh, but that was playing
Aug 14
rababa...@icloud.com
, …
Gardner, Leah
5
Aug 14
cBioPortal user reported error
https://genie.cbioportal.org/results/mutations?cancer_study_list=genie_public&Z_SCORE_THRESHOLD=
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cBioPortal user reported error
https://genie.cbioportal.org/results/mutations?cancer_study_list=genie_public&Z_SCORE_THRESHOLD=
Aug 14
Matteo Tiberti
,
de Bruijn, Ino
2
Aug 12
Variants for FAM86B2 map to two different chromosomes
Hi Matteo, Thanks for reaching out! This looks like a potential two-fold issue. It could be that some
unread,
Variants for FAM86B2 map to two different chromosomes
Hi Matteo, Thanks for reaching out! This looks like a potential two-fold issue. It could be that some
Aug 12
Jessica Gasparello
,
Sanne van der Stam
2
Aug 12
cBioPortal outage - SSL Certificate Expired on api.thehyve.nl
Hi Jessica, Thanks for reaching out. api.thehyve.nl has been expired since 2024 and not used anymore.
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cBioPortal outage - SSL Certificate Expired on api.thehyve.nl
Hi Jessica, Thanks for reaching out. api.thehyve.nl has been expired since 2024 and not used anymore.
Aug 12
Claudia Huettner
,
Sanne van der Stam
2
Aug 12
System not performing search task
Hi Claudia, Apologies for the issue with the “Query by Gene” feature. We recently introduced stricter
unread,
System not performing search task
Hi Claudia, Apologies for the issue with the “Query by Gene” feature. We recently introduced stricter
Aug 12
Kiera Vassallo
,
Sanne van der Stam
3
Aug 12
TCGA PanCancer Atlas Studies query
Hi Kiera, Thank you for bringing this issue to our attention. Our team has resolved the underlying
unread,
TCGA PanCancer Atlas Studies query
Hi Kiera, Thank you for bringing this issue to our attention. Our team has resolved the underlying
Aug 12
fatema pharmacist
,
Sanne van der Stam
2
Aug 12
Query by gene not working
Hi Fatema, Thank you for bringing this issue to our attention. Our team has resolved the underlying
unread,
Query by gene not working
Hi Fatema, Thank you for bringing this issue to our attention. Our team has resolved the underlying
Aug 12
Kacey
,
de Bruijn, Ino
2
Aug 11
/ln?q= gene linkout failing with "Too Many Requests"
Hi Kacey, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
unread,
/ln?q= gene linkout failing with "Too Many Requests"
Hi Kacey, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
Aug 11
Field, Chani (Health)
, …
de Bruijn, Ino
3
Aug 11
Query by Gene not working
Hi Chani, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
unread,
Query by Gene not working
Hi Chani, This should be fixed now. Apologies, we introduced more rate limiting due to the increase
Aug 11
Madhur Bansal
,
de Bruijn, Ino
2
Aug 10
Regarding Slack invite not working
Hi Madhur, Thanks for letting us know about the slack invite issue. Will try to fix that For now I
unread,
Regarding Slack invite not working
Hi Madhur, Thanks for letting us know about the slack invite issue. Will try to fix that For now I
Aug 10
Rebeca Santa Cruz
,
Sanne van der Stam
2
Aug 10
Error retrieving data
Hi Rebeca, It looks like it was a temporary server issue. I retried the steps, and everything seems
unread,
Error retrieving data
Hi Rebeca, It looks like it was a temporary server issue. I retried the steps, and everything seems
Aug 10
Eugenio Logiudice
,
Sanne van der Stam
2
Aug 6
volunteer engineer
Hi Logiudice Eugenio, Thank you for reaching out to us. First and foremost, please accept our deepest
unread,
volunteer engineer
Hi Logiudice Eugenio, Thank you for reaching out to us. First and foremost, please accept our deepest
Aug 6
Barbara Castro Carneiro
,
Tali Mazor
3
Aug 4
ERROR
Hi Tali, It worked now, thank you! Em ter., 4 de ago. de 2026 às 17:46, Tali Mazor <tma...@ds.dfci
unread,
ERROR
Hi Tali, It worked now, thank you! Em ter., 4 de ago. de 2026 às 17:46, Tali Mazor <tma...@ds.dfci
Aug 4
Amal Kamal Abdel-Aziz
, …
de Bruijn, Ino
13
Aug 1
Inaccessible blank "cBioPortal" webpage in Egypt
Hi Ino and JJ Gao, I hope this email finds you well. I tried now to use the provided link above (
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Inaccessible blank "cBioPortal" webpage in Egypt
Hi Ino and JJ Gao, I hope this email finds you well. I tried now to use the provided link above (
Aug 1
Liu Liu
,
JJ Gao
3
Jul 28
Security token expired
Thank you, JJ. It works now. Best, Liu Sent from my iPhone On Jul 27, 2026, at 2:39 PM, JJ Gao <
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Security token expired
Thank you, JJ. It works now. Best, Liu Sent from my iPhone On Jul 27, 2026, at 2:39 PM, JJ Gao <
Jul 28
Matteo Tiberti
,
JJ Gao
3
Jul 24
NA genome assembly for some genomic mutations
Hi JJ, Thank you so much for the quick response and the information! Good to know it will be fixed
unread,
NA genome assembly for some genomic mutations
Hi JJ, Thank you so much for the quick response and the information! Good to know it will be fixed
Jul 24
Trevor Christ
, …
JJ Gao
14
Jul 22
cBioPortal user reported error
Hi Cameron, Thanks for reporting this to us. The link in your message seems working. You might have
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cBioPortal user reported error
Hi Cameron, Thanks for reporting this to us. The link in your message seems working. You might have
Jul 22
Boer, Elena
,
Nikolaus Schultz
4
Jul 16
Error accessing data
Hi Niki, Thank you for letting me know! Happy to hear this. Cheers, Elena Private Information From:
unread,
Error accessing data
Hi Niki, Thank you for letting me know! Happy to hear this. Cheers, Elena Private Information From:
Jul 16
hf123q
,
Nikolaus Schultz
3
Jul 16
来自hf123q的邮件
Hi, This issue has been resolved - thank you for your patience. It was related to a recent change in
unread,
来自hf123q的邮件
Hi, This issue has been resolved - thank you for your patience. It was related to a recent change in
Jul 16
PUTRA, Hadi (CAMBRIDGE UNIVERSITY HOSPITALS NHS FOUNDATION TRUST)
, …
Lautensack, Elias
5
Jul 16
Errors in checking mutations on certain genes
Hi, That's nice to hear! Thanks for solving this so quickly. Best Elias. Von: Nikolaus Schultz
unread,
Errors in checking mutations on certain genes
Hi, That's nice to hear! Thanks for solving this so quickly. Best Elias. Von: Nikolaus Schultz
Jul 16