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cBioPortal for Cancer Genomics Discussion Group

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fairs...@oerc.ox.ac.uk, de Bruijn, Ino2

May 15

[FAIRsharing] Birthday of your FAIRsharing record

Thanks for reaching out! I sent an ownership request. Will review the record Best wishes, Ino From:

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[FAIRsharing] Birthday of your FAIRsharing record

Thanks for reaching out! I sent an ownership request. Will review the record Best wishes, Ino From:

May 15

HUNT, Johanna (BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST), … Benjamin Gross5

May 15

Trouble accessing AACR Project Genie

Hi Johanna, I do not see an entry for you in the AACR Project GENIE registration form. If you did

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Trouble accessing AACR Project Genie

Hi Johanna, I do not see an entry for you in the AACR Project GENIE registration form. If you did

May 15

Brihn, Lesil, Tali Mazor2

May 15

cBioPortal VAF histograms

Hi Lesil, Thank you for the kind words. The VAF histogram is still available, but it has been moved

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cBioPortal VAF histograms

Hi Lesil, Thank you for the kind words. The VAF histogram is still available, but it has been moved

May 15

Alexandre Fittipaldi, Benjamin Gross2

May 15

Request to use cBioPortal API for open non-commercial research platform

Hi Alex, Thank you for your email and your interest in connecting the cBioPortal API to your MedC82

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Request to use cBioPortal API for open non-commercial research platform

Hi Alex, Thank you for your email and your interest in connecting the cBioPortal API to your MedC82

May 15

Rebecca Sansale, Aaron L3

May 13

error when loading study

hi aaron-- sorry, ive been in contact with ino and gaofei on slack. I am the maintainer of this

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error when loading study

hi aaron-- sorry, ive been in contact with ino and gaofei on slack. I am the maintainer of this

May 13

Turski, Michelle, … Aedin.Culhane13

May 13

Request for VPAT for cBioPortal

https://pandoc.org/. will convert file types including markdown to almost anything else From:

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Request for VPAT for cBioPortal

https://pandoc.org/. will convert file types including markdown to almost anything else From:

May 13

James.Salter, JJ Gao2

May 12

Image Licencing Request (590958)

Hi, You are free to use figures from cBioPortal in your educational material, there is no copyright

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Image Licencing Request (590958)

Hi, You are free to use figures from cBioPortal in your educational material, there is no copyright

May 12

Miu ki Yip, jagn...@gmail.com2

May 11

cBioPortal Datahub Public Dataset Load Into Database Issues

Hi Miu thanks for reaching out to cBioPortal team. Which version of cBioPortal are you using for

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cBioPortal Datahub Public Dataset Load Into Database Issues

Hi Miu thanks for reaching out to cBioPortal team. Which version of cBioPortal are you using for

May 11

Alyona Ivanova, Jessica Singh5

May 8

Uploading public data

Hi Jessica, Just following up on my previous message. Could you please provide some guidance on how

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Uploading public data

Hi Jessica, Just following up on my previous message. Could you please provide some guidance on how

May 8

Chua Eng Wee, Ramya Madupuri2

May 6

Inquiry - Mitochondrial DNA datasets

Hi Eng Wee, Thank you for reaching out. This isn't a glitch, mitochondrial DNA-encoded genes (

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Inquiry - Mitochondrial DNA datasets

Hi Eng Wee, Thank you for reaching out. This isn't a glitch, mitochondrial DNA-encoded genes (

May 6

Balaji Krishnamachary, Guizela Huelsz Prince2

May 6

accession details or cohort identifiers

Hi Balaji, Within cBioPortal, cohorts or studies can be uniquely identified by the study ID, which

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accession details or cohort identifiers

Hi Balaji, Within cBioPortal, cohorts or studies can be uniquely identified by the study ID, which

May 6

Oliver Stolpe, Ruslan Forostianov3

May 5

cBioPortal v6.4.1 and SAML

Dear Ruslan, thank you, I got it working in the meantime by setting those properties with help of

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cBioPortal v6.4.1 and SAML

Dear Ruslan, thank you, I got it working in the meantime by setting those properties with help of

May 5

Kyle Beauchamp, Anu Vijay3

Apr 30

Missing Receptor Status in Breast Dataset

Awesome, thank you! On Thu, Apr 30, 2026 at 9:57 AM Anu Vijay <anuvi...@gmail.com> wrote: Hi

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Missing Receptor Status in Breast Dataset

Awesome, thank you! On Thu, Apr 30, 2026 at 9:57 AM Anu Vijay <anuvi...@gmail.com> wrote: Hi

Apr 30

Qierra Brockman, Anu Vijay2

Apr 30

Matched_Norm_Sample_Barcode all NA

Hi Qierra, Thanks for reaching out! The matched normal status can be pulled from the SOMATIC_STATUS

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Matched_Norm_Sample_Barcode all NA

Hi Qierra, Thanks for reaching out! The matched normal status can be pulled from the SOMATIC_STATUS

Apr 30

Mestrallet, Guillaume, … dssa...@niser.ac.in9

Apr 23

Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

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Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

Apr 23

Álvaro Fernández, Tim Kuijpers2

Apr 21

Issue with Data Link

Dear Alvaro, I believe your link is not working since it looks like the URL contains the same sub-url

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Issue with Data Link

Dear Alvaro, I believe your link is not working since it looks like the URL contains the same sub-url

Apr 21

Mantri Pradeep, Jessica Singh2

Apr 20

Interest in contributing to cBioPortal | Request for Slack Invite

Hi Pradeep, Great to see your interest in contributing! I see you've already joined the Slack

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Interest in contributing to cBioPortal | Request for Slack Invite

Hi Pradeep, Great to see your interest in contributing! I see you've already joined the Slack

Apr 20

Md. Ashraful Hasan, Jessica Singh2

Apr 20

Unable to Retrieve ATRX Mutation Genomic Alteration Figure for LGG

Hi Md. Ashraful, Thanks for your message. Just to clarify, in the link you shared, ATRX mutation

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Unable to Retrieve ATRX Mutation Genomic Alteration Figure for LGG

Hi Md. Ashraful, Thanks for your message. Just to clarify, in the link you shared, ATRX mutation

Apr 20

丸山宏二, Jessica Singh2

Apr 20

Dear Maruyama, Thank you for your question. The dataset is formally referred to as the TCGA Pan-

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Dear Maruyama, Thank you for your question. The dataset is formally referred to as the TCGA Pan-

Apr 20

Elizabeth Battley, ole...@thehyve.nl3

Apr 16

Re: Error Message

Hi Elizabeth, Can you try them again? When I access the links I don't get any error: https://www.

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Re: Error Message

Hi Elizabeth, Can you try them again? When I access the links I don't get any error: https://www.

Apr 16

Lorena Magraner, … Acebedo, Alyssa8

Apr 16

AACR Project GENIE

Thank you very much Alyssa, I will have a look at the information. Preliminary view it looks really

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AACR Project GENIE

Thank you very much Alyssa, I will have a look at the information. Preliminary view it looks really

Apr 16

Maria Eduarda Gomes Oliveira, … Aaron L3

Apr 16

cBioPortal user reported error

Hi Maria, THanks for this report. I tried this link and it loaded for me. Can you try again? Did you

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cBioPortal user reported error

Hi Maria, THanks for this report. I tried this link and it loaded for me. Can you try again? Did you

Apr 16

Miller, Lance D, ole...@thehyve.nl2

Apr 16

Explore Selected Studies: Freq = NA

Hi Lance, Which studies are selecting when going to "Explore Selected Studies"? Best

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Explore Selected Studies: Freq = NA

Hi Lance, Which studies are selecting when going to "Explore Selected Studies"? Best

Apr 16

Luis Fernando Iglesias Martinez, … Ino de Bruijn4

Apr 16

Content in files are Git LFS pointers

It was an error on our side that we fixed. Thanks for reporting! El jue, 16 de abr de 2026, 9:52 am,

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Content in files are Git LFS pointers

It was an error on our side that we fixed. Thanks for reporting! El jue, 16 de abr de 2026, 9:52 am,

Apr 16

Pritam Kumar Ghosh, … Tali Mazor5

Apr 13

BCGA is not working properly

Hi Pritam, This email address is for support of cbioportal.org. It seems the issue you are describing

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BCGA is not working properly

Hi Pritam, This email address is for support of cbioportal.org. It seems the issue you are describing

Apr 13

Sergio Rutella, … Madupuri, Ramyasree7

Apr 9

St Jude 2024 data

Hi Ramya, It is working perfectly now! Many thanks again and all the best, Sergio On Wed, 8 Apr 2026

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St Jude 2024 data

Hi Ramya, It is working perfectly now! Many thanks again and all the best, Sergio On Wed, 8 Apr 2026

Apr 9

davide...@gmail.com, Nikolaus Schultz5

Apr 8

CBioPortal dataset license

Thanks for considering my suggestion :-) -- Davide Chicco On Wed, Apr 8, 2026 at 3:47 PM Nikolaus

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CBioPortal dataset license

Thanks for considering my suggestion :-) -- Davide Chicco On Wed, Apr 8, 2026 at 3:47 PM Nikolaus

Apr 8

Yuliia Orlova, Gaofei Zhao2

Apr 7

Cbio Portal with Nginx

Hi Yuliia, The issue seems related to a CORS error. Could you try these steps? Bring down docker-

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Cbio Portal with Nginx

Hi Yuliia, The issue seems related to a CORS error. Could you try these steps? Bring down docker-

Apr 7

Michelle Mølgaard Thomsen, Nikolaus Schultz2

Apr 7

Hi Michelle, Thank you for reaching out. The public cBioPortal at cbioportal.org will always show all

unread,

Hi Michelle, Thank you for reaching out. The public cBioPortal at cbioportal.org will always show all

Apr 7

Neha Talluri, Curation Team2

Apr 6

What is the data source and calling procedure for copy number data in ccle_broad_2019?

Hi, Apologies for the delayed response. We addressed this in detail on the Datahub GitHub thread (

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What is the data source and calling procedure for copy number data in ccle_broad_2019?

Hi, Apologies for the delayed response. We addressed this in detail on the Datahub GitHub thread (

Apr 6

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