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Arushi Rai
,
Priti Kumari
2
Oct 14
MRNA Z scores QUERY
Hi Arushi, You can download the raw data from datahub: https://github.com/cBioPortal/datahub/tree/
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MRNA Z scores QUERY
Hi Arushi, You can download the raw data from datahub: https://github.com/cBioPortal/datahub/tree/
Oct 14
Alessia Bavaro
Oct 14
Mutational signature in GDC HGSOC Dataset
To whom it may concern, I am contacting you for the following reason: I'm doing my thesis using
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Mutational signature in GDC HGSOC Dataset
To whom it may concern, I am contacting you for the following reason: I'm doing my thesis using
Oct 14
Boeschen, Myriam
,
Priti Kumari
3
Oct 14
cBioPortal user reported error
Hi Myriam, The following URL should work: https://www.cbioportal.org/results/comparison?
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cBioPortal user reported error
Hi Myriam, The following URL should work: https://www.cbioportal.org/results/comparison?
Oct 14
Joseph Celidonio
, …
de Bruijn, Ino
24
Oct 14
Variable Definition Confirmation
Good morning, I hope you all had a great weekend. I want to thank you for providing your guidance on
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Variable Definition Confirmation
Good morning, I hope you all had a great weekend. I want to thank you for providing your guidance on
Oct 14
niels bohr
,
Aaron L
2
Oct 11
previous issue already solved!!!
glad to hear it! and thank you for your tremendous contribution to quantum physics! On Fri, Oct 11,
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previous issue already solved!!!
glad to hear it! and thank you for your tremendous contribution to quantum physics! On Fri, Oct 11,
Oct 11
Arushi Rai
Oct 11
download the mRNA z scores (RAW DATA)
Arushi Rai <rai...@udayton.edu>Hello, I have these four sample patient IDs that I extracted
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download the mRNA z scores (RAW DATA)
Arushi Rai <rai...@udayton.edu>Hello, I have these four sample patient IDs that I extracted
Oct 11
内田士朗
, …
Benjamin Gross
6
Oct 11
Inquiry Regarding Age-specific Analysis in cBioPortal for Breast Cancer Studies
Dear Sir/Madam, Thank you for your response. I understand that it is possible to divide the age
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Inquiry Regarding Age-specific Analysis in cBioPortal for Breast Cancer Studies
Dear Sir/Madam, Thank you for your response. I understand that it is possible to divide the age
Oct 11
Bosc L
, …
Fabian Ortega
3
Oct 11
Download lower level copy number alterations from cBioPortal
Is there information about how these cna files were aggregated? I was trying to do a mass download of
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Completed
Download lower level copy number alterations from cBioPortal
Is there information about how these cna files were aggregated? I was trying to do a mass download of
Oct 11
niels bohr
Oct 11
Access denied for user 'cbio_user'
Hi everyone, i ran your simple quick start guide (so pull, init, and docker compose up) but the
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Access denied for user 'cbio_user'
Hi everyone, i ran your simple quick start guide (so pull, init, and docker compose up) but the
Oct 11
Cayetano Galera Martinez
,
Priti Kumari
3
Oct 10
Error report
Hi Priti, Everything solved! Thanks! Best, Caye Enviado desde Outlook para iOS De: Priti Kumari <
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Error report
Hi Priti, Everything solved! Thanks! Best, Caye Enviado desde Outlook para iOS De: Priti Kumari <
Oct 10
Shain, Alan Hunter
, …
Ritika Kundra
3
Oct 9
Deposition of somatic mutation data from phenotypically normal cells
Hi Hunter, Thank you for reaching out to us. We will contact you separately to set this up. Thanks,
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Deposition of somatic mutation data from phenotypically normal cells
Hi Hunter, Thank you for reaching out to us. We will contact you separately to set this up. Thanks,
Oct 9
scientist simon
,
Benjamin Gross
2
Oct 8
Question about TCGA data usage policy
Hi Sahoon, It looks like the data usage policy link on gdac.broadinstitute.org is no longer working.
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Question about TCGA data usage policy
Hi Sahoon, It looks like the data usage policy link on gdac.broadinstitute.org is no longer working.
Oct 8
Sergi Aguiló-Castillo
,
Benjamin Gross
3
Oct 8
Import Studies Example not working
Hi Sergi, Thank you for your report. I've created an issue in our bug tracker so that a
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Import Studies Example not working
Hi Sergi, Thank you for your report. I've created an issue in our bug tracker so that a
Oct 8
Dennis Moccia
,
Benjamin Gross
2
Oct 7
Cancer Types Summary and API
Hi Dennis, I loaded a cancer types summary page/tab with the chrome browser dev tool network tab open
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Cancer Types Summary and API
Hi Dennis, I loaded a cancer types summary page/tab with the chrome browser dev tool network tab open
Oct 7
Efstathios Vlachavas
,
Benjamin Gross
2
Oct 7
License terms and restrictions querying and downloading specific datasets through the cBioPortal web portal
Hi Efstathios, The AGPL license pertains to the cBioPortal source code, not the data. I believe most
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License terms and restrictions querying and downloading specific datasets through the cBioPortal web portal
Hi Efstathios, The AGPL license pertains to the cBioPortal source code, not the data. I believe most
Oct 7
aghil hooshmand
,
Trevor Pugh
2
Oct 3
Teaching cbioportal through case studies with a focus on multi-omics integration.
Hi Aghil, You may be interested in our collection of Tutorials, Webinars, and How To Videos here:
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Teaching cbioportal through case studies with a focus on multi-omics integration.
Hi Aghil, You may be interested in our collection of Tutorials, Webinars, and How To Videos here:
Oct 3
Sergio Alvarez
,
jagn...@gmail.com
2
Oct 2
Question
Hi Sergio, It is possible to create groups such as before and after treatment. For that the samples
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Question
Hi Sergio, It is possible to create groups such as before and after treatment. For that the samples
Oct 2
Atul Anand
,
Benjamin Gross
2
Oct 2
error
Hi Atul, Please provide the original query/URL you are attempting to make within the GENIE portal
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error
Hi Atul, Please provide the original query/URL you are attempting to make within the GENIE portal
Oct 2
Atul Anand
Oct 2
Dear Cbioportal AACR Genie Team, I am getting below error can you please help me?
"{\"req\":{\"method\":\"POST\",\"url\":\"//genie.
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Dear Cbioportal AACR Genie Team, I am getting below error can you please help me?
"{\"req\":{\"method\":\"POST\",\"url\":\"//genie.
Oct 2
Thomas Pauli
,
jagn...@gmail.com
9
Oct 2
api/session/* endpoints - Internal Server Error
Hi Jag, I actually don't know where the password that was displayed in the log came from. I haven
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api/session/* endpoints - Internal Server Error
Hi Jag, I actually don't know where the password that was displayed in the log came from. I haven
Oct 2
Lomibao, Meghanne
, …
Trevor Pugh
4
Oct 1
Cbioportal Questions-Help Needed
Hi Meghanne, Here are some answers to your questions 1. We are collecting tumor fraction values. Are
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Cbioportal Questions-Help Needed
Hi Meghanne, Here are some answers to your questions 1. We are collecting tumor fraction values. Are
Oct 1
Panagiotis Fotakis
,
jagn...@gmail.com
2
Sep 30
question on error bars when plotting the data by RNA expression
Hi Panagiotis, The Plots tab shows a standard box and whiskers plot. I am assuming the whiskers are
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question on error bars when plotting the data by RNA expression
Hi Panagiotis, The Plots tab shows a standard box and whiskers plot. I am assuming the whiskers are
Sep 30
Li, Guangyuan
, …
Federico Vannuccini
6
Sep 29
Inquiry about mRNA expression values
Dear Li Guangyuan, I'm sharing a Dropbox link to an .rda file containing the FPKM data without z-
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Inquiry about mRNA expression values
Dear Li Guangyuan, I'm sharing a Dropbox link to an .rda file containing the FPKM data without z-
Sep 29
Joris Vos
,
jagn...@gmail.com
3
Sep 28
IMPACT panel sizes
Hi Jag, Thanks! That's very helpful. Have a great day, Joris On Friday, September 27, 2024 at 11:
unread,
IMPACT panel sizes
Hi Jag, Thanks! That's very helpful. Have a great day, Joris On Friday, September 27, 2024 at 11:
Sep 28
SHI, YUFEI
, …
Schultz, Nikolaus
12
Sep 27
RE: Reminder# cBioportal# OS for (Col6a3) by using cBioportal & KM plotter
Hi Yufei, The four different TCGA thyroid cancer data sets reflect slightly different versions and
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RE: Reminder# cBioportal# OS for (Col6a3) by using cBioportal & KM plotter
Hi Yufei, The four different TCGA thyroid cancer data sets reflect slightly different versions and
Sep 27
Aaron Atkinson
,
Aaron L
2
Sep 26
Clinical Track Ordering
Hi Aaron (from a fellow Aaron) Can you send me the response for this request on your portal (with
unread,
Clinical Track Ordering
Hi Aaron (from a fellow Aaron) Can you send me the response for this request on your portal (with
Sep 26
Slman s29
,
jagn...@gmail.com
2
Sep 26
COMAPRING
Hi, It is possible to create a combined study of all the datasets that you are interested. After that
unread,
COMAPRING
Hi, It is possible to create a combined study of all the datasets that you are interested. After that
Sep 26
Giulia Mantini
,
jagn...@gmail.com
2
Sep 26
PDAC MSK data 2024
Hi Giulia We are in the process of uploading the entire study dataset to our portal. I will keep you
unread,
PDAC MSK data 2024
Hi Giulia We are in the process of uploading the entire study dataset to our portal. I will keep you
Sep 26
Yahya Daneshbod
,
Aaron L
2
Sep 26
Can you try this again? If it reoccurs, please let us know the sets that you took prior to make the
unread,
Can you try this again? If it reoccurs, please let us know the sets that you took prior to make the
Sep 26
Abhishek Reddy
,
jagn...@gmail.com
2
Sep 26
HTTPS and OKTA or KeyCloak
HI Abhishek, To enable HTTPS, we need to route the port 443 to port 80 (or other cBioPortal port). A
unread,
HTTPS and OKTA or KeyCloak
HI Abhishek, To enable HTTPS, we need to route the port 443 to port 80 (or other cBioPortal port). A
Sep 26