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cBioPortal for Cancer Genomics Discussion Group

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May 8

cBioPortal Datahub Public Dataset Load Into Database Issues

Hi all, I am trying to load some of the public data in the cBioPortal Data hub (https://github.com/

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cBioPortal Datahub Public Dataset Load Into Database Issues

Hi all, I am trying to load some of the public data in the cBioPortal Data hub (https://github.com/

May 8

Turski, Michelle, … Aaron L12

May 8

Request for VPAT for cBioPortal

Glad to help Michelle! --Aaron On Fri, May 8, 2026 at 9:58 AM Turski, Michelle <Michelle.Turski@

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Request for VPAT for cBioPortal

Glad to help Michelle! --Aaron On Fri, May 8, 2026 at 9:58 AM Turski, Michelle <Michelle.Turski@

May 8

Alyona Ivanova, Jessica Singh5

May 8

Uploading public data

Hi Jessica, Just following up on my previous message. Could you please provide some guidance on how

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Uploading public data

Hi Jessica, Just following up on my previous message. Could you please provide some guidance on how

May 8

Chua Eng Wee, Ramya Madupuri2

May 6

Inquiry - Mitochondrial DNA datasets

Hi Eng Wee, Thank you for reaching out. This isn't a glitch, mitochondrial DNA-encoded genes (

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Inquiry - Mitochondrial DNA datasets

Hi Eng Wee, Thank you for reaching out. This isn't a glitch, mitochondrial DNA-encoded genes (

May 6

Balaji Krishnamachary, Guizela Huelsz Prince2

May 6

accession details or cohort identifiers

Hi Balaji, Within cBioPortal, cohorts or studies can be uniquely identified by the study ID, which

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accession details or cohort identifiers

Hi Balaji, Within cBioPortal, cohorts or studies can be uniquely identified by the study ID, which

May 6

Rebecca Sansale, Aaron L2

May 5

error when loading study

Hi Rebbeca, Thanks. It looks to me like this instance is running into a problem with the size of the

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error when loading study

Hi Rebbeca, Thanks. It looks to me like this instance is running into a problem with the size of the

May 5

Oliver Stolpe, Ruslan Forostianov3

May 5

cBioPortal v6.4.1 and SAML

Dear Ruslan, thank you, I got it working in the meantime by setting those properties with help of

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cBioPortal v6.4.1 and SAML

Dear Ruslan, thank you, I got it working in the meantime by setting those properties with help of

May 5

Kyle Beauchamp, Anu Vijay3

Apr 30

Missing Receptor Status in Breast Dataset

Awesome, thank you! On Thu, Apr 30, 2026 at 9:57 AM Anu Vijay <anuvi...@gmail.com> wrote: Hi

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Missing Receptor Status in Breast Dataset

Awesome, thank you! On Thu, Apr 30, 2026 at 9:57 AM Anu Vijay <anuvi...@gmail.com> wrote: Hi

Apr 30

Qierra Brockman, Anu Vijay2

Apr 30

Matched_Norm_Sample_Barcode all NA

Hi Qierra, Thanks for reaching out! The matched normal status can be pulled from the SOMATIC_STATUS

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Matched_Norm_Sample_Barcode all NA

Hi Qierra, Thanks for reaching out! The matched normal status can be pulled from the SOMATIC_STATUS

Apr 30

Mestrallet, Guillaume, … dssa...@niser.ac.in9

Apr 23

Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

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Thank you both! Best, Guillaume -----Original Message----- From: dssa...@niser.ac.in <dssachin@

Apr 23

Álvaro Fernández, Tim Kuijpers2

Apr 21

Issue with Data Link

Dear Alvaro, I believe your link is not working since it looks like the URL contains the same sub-url

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Issue with Data Link

Dear Alvaro, I believe your link is not working since it looks like the URL contains the same sub-url

Apr 21

Mantri Pradeep, Jessica Singh2

Apr 20

Interest in contributing to cBioPortal | Request for Slack Invite

Hi Pradeep, Great to see your interest in contributing! I see you've already joined the Slack

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Interest in contributing to cBioPortal | Request for Slack Invite

Hi Pradeep, Great to see your interest in contributing! I see you've already joined the Slack

Apr 20

Md. Ashraful Hasan, Jessica Singh2

Apr 20

Unable to Retrieve ATRX Mutation Genomic Alteration Figure for LGG

Hi Md. Ashraful, Thanks for your message. Just to clarify, in the link you shared, ATRX mutation

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Unable to Retrieve ATRX Mutation Genomic Alteration Figure for LGG

Hi Md. Ashraful, Thanks for your message. Just to clarify, in the link you shared, ATRX mutation

Apr 20

丸山宏二, Jessica Singh2

Apr 20

Dear Maruyama, Thank you for your question. The dataset is formally referred to as the TCGA Pan-

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Dear Maruyama, Thank you for your question. The dataset is formally referred to as the TCGA Pan-

Apr 20

Elizabeth Battley, ole...@thehyve.nl3

Apr 16

Re: Error Message

Hi Elizabeth, Can you try them again? When I access the links I don't get any error: https://www.

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Re: Error Message

Hi Elizabeth, Can you try them again? When I access the links I don't get any error: https://www.

Apr 16

Lorena Magraner, … Acebedo, Alyssa8

Apr 16

AACR Project GENIE

Thank you very much Alyssa, I will have a look at the information. Preliminary view it looks really

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AACR Project GENIE

Thank you very much Alyssa, I will have a look at the information. Preliminary view it looks really

Apr 16

Maria Eduarda Gomes Oliveira, … Aaron L3

Apr 16

cBioPortal user reported error

Hi Maria, THanks for this report. I tried this link and it loaded for me. Can you try again? Did you

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cBioPortal user reported error

Hi Maria, THanks for this report. I tried this link and it loaded for me. Can you try again? Did you

Apr 16

Miller, Lance D, ole...@thehyve.nl2

Apr 16

Explore Selected Studies: Freq = NA

Hi Lance, Which studies are selecting when going to "Explore Selected Studies"? Best

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Explore Selected Studies: Freq = NA

Hi Lance, Which studies are selecting when going to "Explore Selected Studies"? Best

Apr 16

Luis Fernando Iglesias Martinez, … Ino de Bruijn4

Apr 16

Content in files are Git LFS pointers

It was an error on our side that we fixed. Thanks for reporting! El jue, 16 de abr de 2026, 9:52 am,

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Content in files are Git LFS pointers

It was an error on our side that we fixed. Thanks for reporting! El jue, 16 de abr de 2026, 9:52 am,

Apr 16

Pritam Kumar Ghosh, … Tali Mazor5

Apr 13

BCGA is not working properly

Hi Pritam, This email address is for support of cbioportal.org. It seems the issue you are describing

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BCGA is not working properly

Hi Pritam, This email address is for support of cbioportal.org. It seems the issue you are describing

Apr 13

Sergio Rutella, … Madupuri, Ramyasree7

Apr 9

St Jude 2024 data

Hi Ramya, It is working perfectly now! Many thanks again and all the best, Sergio On Wed, 8 Apr 2026

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St Jude 2024 data

Hi Ramya, It is working perfectly now! Many thanks again and all the best, Sergio On Wed, 8 Apr 2026

Apr 9

davide...@gmail.com, Nikolaus Schultz5

Apr 8

CBioPortal dataset license

Thanks for considering my suggestion :-) -- Davide Chicco On Wed, Apr 8, 2026 at 3:47 PM Nikolaus

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CBioPortal dataset license

Thanks for considering my suggestion :-) -- Davide Chicco On Wed, Apr 8, 2026 at 3:47 PM Nikolaus

Apr 8

Yuliia Orlova, Gaofei Zhao2

Apr 7

Cbio Portal with Nginx

Hi Yuliia, The issue seems related to a CORS error. Could you try these steps? Bring down docker-

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Cbio Portal with Nginx

Hi Yuliia, The issue seems related to a CORS error. Could you try these steps? Bring down docker-

Apr 7

Michelle Mølgaard Thomsen, Nikolaus Schultz2

Apr 7

Hi Michelle, Thank you for reaching out. The public cBioPortal at cbioportal.org will always show all

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Hi Michelle, Thank you for reaching out. The public cBioPortal at cbioportal.org will always show all

Apr 7

Neha Talluri, Curation Team2

Apr 6

What is the data source and calling procedure for copy number data in ccle_broad_2019?

Hi, Apologies for the delayed response. We addressed this in detail on the Datahub GitHub thread (

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What is the data source and calling procedure for copy number data in ccle_broad_2019?

Hi, Apologies for the delayed response. We addressed this in detail on the Datahub GitHub thread (

Apr 6

Jill Bigler, … müge balaban6

Apr 5

cBioPortal user reported error

https://www.cbioportal.org/results/oncoprint?cancer_study_list=

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cBioPortal user reported error

https://www.cbioportal.org/results/oncoprint?cancer_study_list=

Apr 5

Soumya Joshi, Nikolaus Schultz4

Apr 1

Re: Studying Phosphorylation Levels

Thanks for the information. Do you know of any dataset or database that I can use to study LATS

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Re: Studying Phosphorylation Levels

Thanks for the information. Do you know of any dataset or database that I can use to study LATS

Apr 1

Steve Neuhauser, de Bruijn, Ino2

Apr 1

Organization of studies into groups on query / home page

HI Steve, Thanks for reaching out! This is currently managed through application configuration: https

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Organization of studies into groups on query / home page

HI Steve, Thanks for reaching out! This is currently managed through application configuration: https

Apr 1

Jerome Koopman, Nikolaus Schultz2

Mar 31

Breast Cancer studies with PIK3CA mutation

Hi, You can query all breast cancer studies for PIK3CA and see the frequency of PIK3CA mutations in

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Breast Cancer studies with PIK3CA mutation

Hi, You can query all breast cancer studies for PIK3CA and see the frequency of PIK3CA mutations in

Mar 31

Ines Boga, Nikolaus Schultz2

Mar 31

Enquiry regarding survival data: Acute Myeloid Leukemia Firehose Legacy dataset

Hi Ines, This is a good question - we would not use a “0” to indicate missing data, so I would assume

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Enquiry regarding survival data: Acute Myeloid Leukemia Firehose Legacy dataset

Hi Ines, This is a good question - we would not use a “0” to indicate missing data, so I would assume

Mar 31

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