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cBioPortal for Cancer Genomics Discussion Group

1–30 of 5126

This mailing list is for questions that are related to cbioportal.org. In order to filter out spams, every message is moderated. If you don't see your message posted immediately, it will be moderated and posted later.

0 selected

Schneider, Katharina, … JJ Gao3

May 21

Neuroblastoma studies archived?

Hi Katharine, Sorry for hte issue. Thanks for contacting us. Would you please give us some more

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Neuroblastoma studies archived?

Hi Katharine, Sorry for hte issue. Thanks for contacting us. Would you please give us some more

May 21

Ana Clara Carrera, … Lafaure Rachel11

May 20

cBioPortal user reported error

Bonjour, Je me permet de vous contacter suite à un message d'erreur que j'ai depuis quelques

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cBioPortal user reported error

Bonjour, Je me permet de vous contacter suite à un message d'erreur que j'ai depuis quelques

May 20

Lucas Wang, … Lucas Wang8

May 19

There is no functional impact data. Is this correct? On Mon, May 19, 2025 at 2:33 AM Zeynep Karagöz

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There is no functional impact data. Is this correct? On Mon, May 19, 2025 at 2:33 AM Zeynep Karagöz

May 19

Alina Steege, … Joseph Cappadona3

May 19

legend mutations

Based on this PR -- https://github.com/cBioPortal/cbioportal-frontend/pull/5057#issue-2700890487 --

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legend mutations

Based on this PR -- https://github.com/cBioPortal/cbioportal-frontend/pull/5057#issue-2700890487 --

May 19

Harika Gannu, … de Bruijn, Ino7

May 13

compatible keycloak version for cbioportal version 6.0.24

Hi Niels, Thanks for checking in – replied here: https://github.com/cBioPortal/cbioportal/issues/

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compatible keycloak version for cbioportal version 6.0.24

Hi Niels, Thanks for checking in – replied here: https://github.com/cBioPortal/cbioportal/issues/

May 13

Pietro Guerra, Tali Mazor2

May 13

Hi Pietro, There is not currently a way to perform differential pathway analysis between groups. We

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Hi Pietro, There is not currently a way to perform differential pathway analysis between groups. We

May 13

Alok Swaroop, … Sumer, Selcuk3

May 12

Mutation Mapper 3D viewer

Hi Alok, Unfortunately, the feature is currently broken due to a backward incompatibility issue with

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Mutation Mapper 3D viewer

Hi Alok, Unfortunately, the feature is currently broken due to a backward incompatibility issue with

May 12

Leon Serrano, Javier, … Morris, Luc5

May 9

Ty! Works! Luc On May 9, 2025, at 2:11 PM, Tali Mazor <tma...@ds.dfci.harvard.edu> wrote: Hi

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Ty! Works! Luc On May 9, 2025, at 2:11 PM, Tali Mazor <tma...@ds.dfci.harvard.edu> wrote: Hi

May 9

Shanze Khan, Tali Mazor2

May 9

Error after submit the query

Hi Shanze, Thanks for reaching out. We were experiencing some technical issues but they are now

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Error after submit the query

Hi Shanze, Thanks for reaching out. We were experiencing some technical issues but they are now

May 9

Clayton, Adam, Tali Mazor2

May 9

Error validating gene symbols

Hi Adam, Thanks for reaching out. We were experiencing some technical issues but they are now

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Error validating gene symbols

Hi Adam, Thanks for reaching out. We were experiencing some technical issues but they are now

May 9

Nuri Temiz, … Tali Mazor3

May 9

Hi Jessica, Thanks for reaching out. We were experiencing some technical issues but they are now

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Hi Jessica, Thanks for reaching out. We were experiencing some technical issues but they are now

May 9

Eason, Matthew, Aaron L2

May 9

Hi Matthew, We are experiencing some technical issues which look to be resolved now. On Fri, May 9,

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Hi Matthew, We are experiencing some technical issues which look to be resolved now. On Fri, May 9,

May 9

Altwegg, Kristin (NIH/NCATS) [F], Tali Mazor3

May 8

Question about getting transcriptomic profiles from CBioPortal

Dear Tali, This is great advice! Thank you so much for the detailed email, I am incredibly

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Question about getting transcriptomic profiles from CBioPortal

Dear Tali, This is great advice! Thank you so much for the detailed email, I am incredibly

May 8

Taylor Firman, … Tali Mazor3

May 7

cBioPortal Scavenger Hunt

Hi Taylor - I'm so glad that helped! Please do let us know how it goes. Getting contributors to

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cBioPortal Scavenger Hunt

Hi Taylor - I'm so glad that helped! Please do let us know how it goes. Getting contributors to

May 7

Harry Sun, Ramya Madupuri8

May 5

Ramya Madupuri, How to import Microbiome data into cBioportal?

Hi Harry, Just to confirm, you loaded the Microbiome Signature data, but when you selected a few

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Ramya Madupuri, How to import Microbiome data into cBioportal?

Hi Harry, Just to confirm, you loaded the Microbiome Signature data, but when you selected a few

May 5

Dr Chirantan Bose, JJ Gao2

May 5

Regarding Breast cancer Transcriptomics data

Dear Dr Chirantan Bose, Sorry we do not have user support by call. Would you please let us know if

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Regarding Breast cancer Transcriptomics data

Dear Dr Chirantan Bose, Sorry we do not have user support by call. Would you please let us know if

May 5

Vincent Duchaos, … Baby Anusha Satravada5

May 1

Errors when importing public studies on a local instance

Hi Vincent, Thanks for the follow-up and for clarifying. We understand the issue and are actively

unread,

Errors when importing public studies on a local instance

Hi Vincent, Thanks for the follow-up and for clarifying. We understand the issue and are actively

May 1

Das, Biswajit (NIH/NCI) [C], … Ritika Kundra6

May 1

Uploading NCI PDMR data for cBioPortal

Thank you. From: Ritika Kundra <ritika...@gmail.com> Date: Thursday, May 1, 2025 at 09:50

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Uploading NCI PDMR data for cBioPortal

Thank you. From: Ritika Kundra <ritika...@gmail.com> Date: Thursday, May 1, 2025 at 09:50

May 1

Nastase, Anca M, Nikolaus Schultz3

Apr 29

Custom MutationMapper URL

Dear Niki, Thank you for your reply. This is really helpful. Kind wishes, Anca From: Nikolaus Schultz

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Custom MutationMapper URL

Dear Niki, Thank you for your reply. This is really helpful. Kind wishes, Anca From: Nikolaus Schultz

Apr 29

Joseph Celidonio, … Tali Mazor41

Apr 28

Variable Definition Confirmation

Hi Joe, If you hover your mouse over one of the group names, you'll see a pop-up like in the

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Variable Definition Confirmation

Hi Joe, If you hover your mouse over one of the group names, you'll see a pop-up like in the

Apr 28

Joe Rich, Nikolaus Schultz2

Apr 26

Exceeded LFS budget on datahub

Dear Joe, We apologize for the inconvenience… unfortunately, we have exceeded the monthly quota for

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Exceeded LFS budget on datahub

Dear Joe, We apologize for the inconvenience… unfortunately, we have exceeded the monthly quota for

Apr 26

Mccann, Patrick, Schultz, Nikolaus2

Apr 26

Download mutation data

Hi Pat, There is currently no way to download the full mutation data directly through cBioPortal, but

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Download mutation data

Hi Pat, There is currently no way to download the full mutation data directly through cBioPortal, but

Apr 26

Harika Gannu, Benjamin Gross7

Apr 23

cbioportal https

Thanks Benjamin for sharing more details. But, I already tried, it didn't work. On Thursday,

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cbioportal https

Thanks Benjamin for sharing more details. But, I already tried, it didn't work. On Thursday,

Apr 23

Andrea Aquino Cruz, Priti Kumari3

Apr 22

Request for TP53 Data

Hi Andrea, You can download all the data from the Datahub. Hope this helps, Priti On Tue, Apr 22,

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Request for TP53 Data

Hi Andrea, You can download all the data from the Datahub. Hope this helps, Priti On Tue, Apr 22,

Apr 22

Lucas Wang, Priti Kumari2

Apr 22

Hi Lucas, You can download all mutations from the Datahub. We do not keep information on the

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Hi Lucas, You can download all mutations from the Datahub. We do not keep information on the

Apr 22

Ji Hen Lau, Priti Kumari4

Apr 22

Issue with Discrete CNA Not Showing in Mutations Tab (CGHcall, sWGS)

Hi, I think I kind of sorted the issue out. It seems there's some internal data structure error

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Issue with Discrete CNA Not Showing in Mutations Tab (CGHcall, sWGS)

Hi, I think I kind of sorted the issue out. It seems there's some internal data structure error

Apr 22

彭仲特, Priti Kumari2

Apr 21

Hi zhongte, Source data for TCGA studies are available in the Genomic Data Commons. They also have

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Hi zhongte, Source data for TCGA studies are available in the Genomic Data Commons. They also have

Apr 21

Allen, Destiney X, Nikolaus Schultz3

Apr 21

Mutations tab annotations

Hi Niki, Yes, this was very helpful. Thank you! Regards, Destiney D. Allen, MB(ASCP) CM , Ph.D.

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Mutations tab annotations

Hi Niki, Yes, this was very helpful. Thank you! Regards, Destiney D. Allen, MB(ASCP) CM , Ph.D.

Apr 21

MOLONEY, Kate (SALISBURY NHS FOUNDATION TRUST), … Benjamin Gross6

Apr 18

GENIE data access

Ok, let me know if you run into any more issues logging in. -Benjamin On Apr 18, 2025, at 5:21 PM,

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GENIE data access

Ok, let me know if you run into any more issues logging in. -Benjamin On Apr 18, 2025, at 5:21 PM,

Apr 18

Harry Sun, de Bruijn, Ino8

Apr 17

Why did I use Maven build cbioportal v6.1.0,6.2.0,6.2.1 and get failed ?

Ino, cBioportal v6.2.1 doesn't work after I completed "mvn -DskipTests clean install"

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Why did I use Maven build cbioportal v6.1.0,6.2.0,6.2.1 and get failed ?

Ino, cBioportal v6.2.1 doesn't work after I completed "mvn -DskipTests clean install"

Apr 17

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