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cBioPortal for Cancer Genomics Discussion Group

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Mohammed Barakat, Tali Mazor3

Feb 14

Creating co-Mutation Groups

Dear Dr. Mazor, Thank you so much for your help and for the specific guidance on using the '

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Creating co-Mutation Groups

Dear Dr. Mazor, Thank you so much for your help and for the specific guidance on using the '

Feb 14

ramakrishnan krishnan, Tali Mazor3

Feb 13

The website is back up. Thanks for your patience. On Thu, Feb 12, 2026 at 5:12 PM ramakrishnan

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The website is back up. Thanks for your patience. On Thu, Feb 12, 2026 at 5:12 PM ramakrishnan

Feb 13

Franz Ketzer, … Ramya Madupuri6

Feb 12

mRNA profile not available

Hi Franz, Yes, we have identified that a few studies were mistakenly excluded from the query results.

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mRNA profile not available

Hi Franz, Yes, we have identified that a few studies were mistakenly excluded from the query results.

Feb 12

prasanth yenduri

Feb 12

Regarding cbio chat interface

Hi, I like to explore the cbio chat interface. Could you please help in providing access -- Thanks

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Regarding cbio chat interface

Hi, I like to explore the cbio chat interface. Could you please help in providing access -- Thanks

Feb 12

Prasanth Yenduri

Feb 12

Incremental Load Support for CNA DISCRETE_LONG Datatype

Hi , I have observed that incremental load is currently not supported for the CNA DISCRETE_LONG

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Incremental Load Support for CNA DISCRETE_LONG Datatype

Hi , I have observed that incremental load is currently not supported for the CNA DISCRETE_LONG

Feb 12

Claudia Huettner, Aaron L2

Feb 11

repeated error message

Thanks Claudia. Looking. On Wed, Feb 11, 2026 at 1:42 PM Claudia Huettner <claudia.huettner@

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repeated error message

Thanks Claudia. Looking. On Wed, Feb 11, 2026 at 1:42 PM Claudia Huettner <claudia.huettner@

Feb 11

QUAN LI, JJ Gao2

Feb 11

Hi Quan, Thanks so much for reaching out! Apologies for the delayed response. This work is in the

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Hi Quan, Thanks so much for reaching out! Apologies for the delayed response. This work is in the

Feb 11

Rebecca Sansale, Gaofei Zhao3

Feb 11

Cannot Initialize CBP from Docker

Hi Gaofei-- I looked into my issue more and the SQL server actually initializes fine. This problem

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Cannot Initialize CBP from Docker

Hi Gaofei-- I looked into my issue more and the SQL server actually initializes fine. This problem

Feb 11

Marks, Chris D, JJ Gao2

Feb 11

Rate limiting on API

Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the site was

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Rate limiting on API

Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the site was

Feb 11

matteo....@gmail.com, … Aaron L14

Feb 11

Error 429 when using cBioPortal API

Hello, For now we have restored access for api users at the usual address www.cbioportal.org. We

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Error 429 when using cBioPortal API

Hello, For now we have restored access for api users at the usual address www.cbioportal.org. We

Feb 11

Yin, Yue He/Him (AHN), JJ Gao2

Feb 11

cBioPortal() doesn't Work because too many requests

Hi Yue He, Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the

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cBioPortal() doesn't Work because too many requests

Hi Yue He, Thanks for reaching out to us. Sorry for the trouble. You might have caught us when the

Feb 11

Tsuyoshi Umeda, JJ Gao2

Feb 11

CBioPortal_Chat interface access request

Thanks so much for reaching out! This work is in prototype stage, so keep expectations low 😊 (

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CBioPortal_Chat interface access request

Thanks so much for reaching out! This work is in prototype stage, so keep expectations low 😊 (

Feb 11

Pritam Kumar Ghosh, JJ Gao3

Feb 10

cBioPortal user reported error

Thank you so much Get Outlook for Android From: JJ Gao <jianji...@gmail.com> Sent:

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cBioPortal user reported error

Thank you so much Get Outlook for Android From: JJ Gao <jianji...@gmail.com> Sent:

Feb 10

BARROWS, Natalie (BIRMINGHAM WOMEN'S AND CHILDREN'S NHS FOUNDATION TRUST), JJ Gao2

Feb 10

Downloading datasets available within cBioPortal

Dear Natalie, Thank you for your inquiry. The Genie BPC data is available for download on Synapse:

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Downloading datasets available within cBioPortal

Dear Natalie, Thank you for your inquiry. The Genie BPC data is available for download on Synapse:

Feb 10

Amit Mukherjee, Ruslan Forostianov3

Feb 10

Question on AI GuardRails

Hey Ruslan, Apologies, did not get ur response earlier.I would expect something like, it is an

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Question on AI GuardRails

Hey Ruslan, Apologies, did not get ur response earlier.I would expect something like, it is an

Feb 10

Steven Gray, JJ Gao2

Feb 10

Error encountered in cBioPortal

Hi Steven, Thanks for reaching out. This might be a one-time glitch. Would you please try again and

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Error encountered in cBioPortal

Hi Steven, Thanks for reaching out. This might be a one-time glitch. Would you please try again and

Feb 10

Whitney Brandt, Aaron L2

Feb 6

We're looking. Thanks for the heads up Whtney. On Fri, Feb 6, 2026 at 12:06 PM Whitney Brandt

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We're looking. Thanks for the heads up Whtney. On Fri, Feb 6, 2026 at 12:06 PM Whitney Brandt

Feb 6

Samuel Kellen, … Rebecca Sansale9

Feb 5

Unable to iniitalize cBioPortal off Docker

Hi Ben-- I am running into the same issue. I have followed the instructions for Deploying CBP with

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Unable to iniitalize cBioPortal off Docker

Hi Ben-- I am running into the same issue. I have followed the instructions for Deploying CBP with

Feb 5

Michon Clemence, Gaofei Zhao3

Feb 4

Error cbioportal

Hello, Thank you for your answer. I have been experiencing delays since the beginning of the week

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Error cbioportal

Hello, Thank you for your answer. I have been experiencing delays since the beginning of the week

Feb 4

Hsiao, Yi-Wen, Nikolaus Schultz2

Feb 4

Question regarding accessing patient-level SNP and CNV data in GENIE

HI, All GENIE data is available for download via Synapse at this URL: https://genie.synapse.org/ Niki

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Question regarding accessing patient-level SNP and CNV data in GENIE

HI, All GENIE data is available for download via Synapse at this URL: https://genie.synapse.org/ Niki

Feb 4

김예은, Nikolaus Schultz2

Feb 4

Oh no! We encountered an error.

Hi, The query works fine for me - can you please try again? Maybe this was just a temporary issue

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Oh no! We encountered an error.

Hi, The query works fine for me - can you please try again? Maybe this was just a temporary issue

Feb 4

Setlem, Rohit, M.S., Benjamin Gross3

Jan 28

cBioPortal Import Error: Duplicate SV/Fusion Entries

Hi Benjamin, That did the trick. Aligning our columns with the headers with UNIQUENESS_COLUMNS

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cBioPortal Import Error: Duplicate SV/Fusion Entries

Hi Benjamin, That did the trick. Aligning our columns with the headers with UNIQUENESS_COLUMNS

Jan 28

Anant Jamuar, de Bruijn, Ino2

Jan 28

GSoC Inquiry - Data Science and Analytical Backend

Hi Anant, Thanks for reaching out! The best way to get started is to: 1. Browse open issues — look

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GSoC Inquiry - Data Science and Analytical Backend

Hi Anant, Thanks for reaching out! The best way to get started is to: 1. Browse open issues — look

Jan 28

Andrea Yung, Benjamin Gross2

Jan 27

Mutation Mapper - no lollipop

Hi Andrea, It looks the MutationMapper tool wants the data in tab (or space delimited format). Also,

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Mutation Mapper - no lollipop

Hi Andrea, It looks the MutationMapper tool wants the data in tab (or space delimited format). Also,

Jan 27

Emilia Manko, … Anu Vijay5

Jan 26

Access to HCMI dataset

Hi Emilia, Hope you are doing well! Thank you for following up. At the moment, the associated paper

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Access to HCMI dataset

Hi Emilia, Hope you are doing well! Thank you for following up. At the moment, the associated paper

Jan 26

Yaiza Mariela Jung Garcia, Benjamin Gross2

Jan 26

cBioPortal user reported error

Hi Yaiza, Thank you for your email. Can you provide me with the query you were attempting to make? I

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cBioPortal user reported error

Hi Yaiza, Thank you for your email. Can you provide me with the query you were attempting to make? I

Jan 26

Hannan Wong, Benjamin Gross2

Jan 24

Queries regarding GISTIC output for Pancancer Atlas

Hi Hannan, Thank you for your email. The data_cna.txt files for TCGA PanCancer Atlas studies in

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Queries regarding GISTIC output for Pancancer Atlas

Hi Hannan, Thank you for your email. The data_cna.txt files for TCGA PanCancer Atlas studies in

Jan 24

Adityaraj Dhuria, Benjamin Gross2

Jan 24

nquiry regarding esophageal cancer cohorts with histopathology data for TP53-WSI research

Hi Aditya, Thank you for your email. Unfortunately, we do not track which data modalities are

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nquiry regarding esophageal cancer cohorts with histopathology data for TP53-WSI research

Hi Aditya, Thank you for your email. Unfortunately, we do not track which data modalities are

Jan 24

Noah Johannessen, Benjamin Gross2

Jan 24

Quick question from a CS student at TAMU

Hi Noah, Thanks for your email. It's unclear from your email what you are asking. As you point

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Quick question from a CS student at TAMU

Hi Noah, Thanks for your email. It's unclear from your email what you are asking. As you point

Jan 24

Manini, Nicholas, … Tali Mazor4

Jan 21

Sample Information

Hi Nick, I suspect you were looking at https://cbiodfci.org/ where you can access data from the DFCI

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Sample Information

Hi Nick, I suspect you were looking at https://cbiodfci.org/ where you can access data from the DFCI

Jan 21

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