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김주원
,
Nikolaus Schultz
3
8:29 AM
Issues with Displaying Mutations in Mutation Mapper
Thank you! It has been completely resolved. It's all thanks to you :) 2024년 4월 24일 수요일 오후 9시 17분
unread,
Issues with Displaying Mutations in Mutation Mapper
Thank you! It has been completely resolved. It's all thanks to you :) 2024년 4월 24일 수요일 오후 9시 17분
8:29 AM
Tebon, Peyton
,
Nikolaus Schultz
2
8:26 AM
Sarcoma panel sequencing for cBioPortal
Hi Peyton, Yes, your data set seems to be a good fit for cBioPortal. I have cc'd Ritika on this
unread,
Sarcoma panel sequencing for cBioPortal
Hi Peyton, Yes, your data set seems to be a good fit for cBioPortal. I have cc'd Ritika on this
8:26 AM
Bill
8:13 AM
SAML setting up_Cbioportal version and Keycloak version
Hi, I have two questions: 1) I set up SAML using cBioportal 5.4.10 and keycloak:4.8.3.Final. Is this
unread,
SAML setting up_Cbioportal version and Keycloak version
Hi, I have two questions: 1) I set up SAML using cBioportal 5.4.10 and keycloak:4.8.3.Final. Is this
8:13 AM
Choe, Michelle
Apr 23
Open Pediatric Cancer Project
Hello, Thank you for the amazing work and making these public databases available for research! I
unread,
Open Pediatric Cancer Project
Hello, Thank you for the amazing work and making these public databases available for research! I
Apr 23
Ikhapoh, Izuagie
Apr 23
Bladder cancer datasets
Hi, Hope all is well with you. I am a student currently doing research in urothelial carcinoma and I
unread,
Bladder cancer datasets
Hi, Hope all is well with you. I am a student currently doing research in urothelial carcinoma and I
Apr 23
Shayna Simonstein
,
Avery Wang
3
Apr 23
Downloading data from sarcoma_msk_2022 (7494 patients)
Great, thank you so much for checking Avery! On Monday, April 22, 2024 at 9:32:00 AM UTC-4 Avery Wang
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Downloading data from sarcoma_msk_2022 (7494 patients)
Great, thank you so much for checking Avery! On Monday, April 22, 2024 at 9:32:00 AM UTC-4 Avery Wang
Apr 23
Anurag Saxena
,
jagn...@gmail.com
3
Apr 22
Upgrading cbp installation from 3.7.15 to 5.4.10
Thank you Jag. I decided to create a new instance instead of upgrading to make the process easier on
unread,
Upgrading cbp installation from 3.7.15 to 5.4.10
Thank you Jag. I decided to create a new instance instead of upgrading to make the process easier on
Apr 22
Phang, Tzu
,
Tali Mazor
3
Apr 22
AACR Molecular Biology in Clinical Oncology workshop, San Diego 2024
Hi Tali, Happy to ZOOM and discuss the workshop. I am in Denver Mountain time: Thursday ( 04-25-2024
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AACR Molecular Biology in Clinical Oncology workshop, San Diego 2024
Hi Tali, Happy to ZOOM and discuss the workshop. I am in Denver Mountain time: Thursday ( 04-25-2024
Apr 22
Kwiatkowski, David J.,MD, PhD
Apr 22
Structural variants on Genie cbio
Hi there- I would like to look at the list of structural variants for a given cancer type using the
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Structural variants on Genie cbio
Hi there- I would like to look at the list of structural variants for a given cancer type using the
Apr 22
Kaela Boyce
,
Nikolaus Schultz
2
Apr 22
Lung Squamous Cell Carcinoma
Hi Kaela, DNA copy-number data in cBioPortal comes solely from DNA data - in the case of TCGA, it is
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Lung Squamous Cell Carcinoma
Hi Kaela, DNA copy-number data in cBioPortal comes solely from DNA data - in the case of TCGA, it is
Apr 22
Qi, Yuwei
Apr 22
TCGA PanCancer Altas Radiation treatment details
Dear cBioPortal support team, Thanks for creating and maintaining such a great platform. Currently, I
unread,
TCGA PanCancer Altas Radiation treatment details
Dear cBioPortal support team, Thanks for creating and maintaining such a great platform. Currently, I
Apr 22
nhodge
, …
Kaela Boyce
3
Apr 22
Lung Squamous Cell Carcinoma
Good afternoon, Thank you for your kind response. Based on this information does the data type "
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Lung Squamous Cell Carcinoma
Good afternoon, Thank you for your kind response. Based on this information does the data type "
Apr 22
Daiana Toader - QIAGEN
Apr 22
https://www.cbioportal.org/webservice.do?cmd=getCancerStudies not working
Hello, was any change in the url? calling https://www.cbioportal.org/webservice.do?cmd=
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https://www.cbioportal.org/webservice.do?cmd=getCancerStudies not working
Hello, was any change in the url? calling https://www.cbioportal.org/webservice.do?cmd=
Apr 22
Ikhapoh, Izuagie
,
Avery Wang
2
Apr 22
Uploading public data
Good morning Izuagie, Thanks for reaching out. You can add more details about the specific questions
unread,
Uploading public data
Good morning Izuagie, Thanks for reaching out. You can add more details about the specific questions
Apr 22
Kevin Wang
,
Charles Haynes
3
Apr 18
SAML setup problem
Hi Charles, Thanks very much for the help. I am following the tutorial to install cbioportal with
unread,
SAML setup problem
Hi Charles, Thanks very much for the help. I am following the tutorial to install cbioportal with
Apr 18
Rafi Danino
Apr 18
expanding my dataset
Hello I am interested in expanding my dataset for analysis purposes and would appreciate your
unread,
expanding my dataset
Hello I am interested in expanding my dataset for analysis purposes and would appreciate your
Apr 18
Nehir Kızılilsoley
, …
Ramya Madupuri
3
Apr 17
TCGA-GBM GeneExp subtype annotations
Hi Nehir, Thanks for reaching out. The transcriptional subtype annotations for TCGA-GBM on cBioPortal
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TCGA-GBM GeneExp subtype annotations
Hi Nehir, Thanks for reaching out. The transcriptional subtype annotations for TCGA-GBM on cBioPortal
Apr 17
Shayna Simonstein
Apr 17
Question about Importer not saving any records to the database
Hello, I am trying to upload the gbm_cptac_2021 study to an internal cbioportal instance but am
unread,
Question about Importer not saving any records to the database
Hello, I am trying to upload the gbm_cptac_2021 study to an internal cbioportal instance but am
Apr 17
smahase
Apr 16
Inquiry on PLD
Good Day, I wanted to inquire about does the data type copy number come from dna sequencing or is it
unread,
Inquiry on PLD
Good Day, I wanted to inquire about does the data type copy number come from dna sequencing or is it
Apr 16
aghil hooshmand
,
de Bruijn, Ino
3
Apr 16
cbioportal for liquid biopsy data
My pleasure! Best wishes, Ino From: aghil hooshmand <aghil.h...@gmail.com> Date: Tuesday,
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cbioportal for liquid biopsy data
My pleasure! Best wishes, Ino From: aghil hooshmand <aghil.h...@gmail.com> Date: Tuesday,
Apr 16
Ísis Salviano Soares de Amorim
Apr 16
Data normalization
Dear, I would like ask if data of the mRNA Expression (RNA Seq V2 RSEM) (log2(value+1)) or Z-scores
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Data normalization
Dear, I would like ask if data of the mRNA Expression (RNA Seq V2 RSEM) (log2(value+1)) or Z-scores
Apr 16
Shatnawi, Aymen
, …
Ramya Madupuri
3
Apr 16
Query Regarding Dataset Description
Hi Aymen, Thanks for reaching out. The expression data in the METABRIC study is log2-intensities. We
unread,
Query Regarding Dataset Description
Hi Aymen, Thanks for reaching out. The expression data in the METABRIC study is log2-intensities. We
Apr 16
Thalambedu, Nishanth
,
jagn...@gmail.com
2
Apr 15
QUERY in identifying Gene mutations
Hi Nishanth It is possible to select any number of genes to filter in the study view page. Steps:
unread,
QUERY in identifying Gene mutations
Hi Nishanth It is possible to select any number of genes to filter in the study view page. Steps:
Apr 15
Sirohi, Deepika
,
jagn...@gmail.com
2
Apr 15
Digital slide images
Hi Deepika, The slides for TCGA data are from external websites. For example/- This slide for a
unread,
Digital slide images
Hi Deepika, The slides for TCGA data are from external websites. For example/- This slide for a
Apr 15
Maria Kocsis-Steinbach
,
jagn...@gmail.com
5
Apr 15
Structural Variants by molecularProfileId - error
Hi Jag, Thank you for the answer, now it is clear. Of course, this missing functionality would be
unread,
Structural Variants by molecularProfileId - error
Hi Jag, Thank you for the answer, now it is clear. Of course, this missing functionality would be
Apr 15
Edmond Box
,
jagn...@gmail.com
2
Apr 12
Gene expression within treatment subset??
HI Edmond, It is possible to create custom groups in cBioPortal to match any criteria for patients.
unread,
Gene expression within treatment subset??
HI Edmond, It is possible to create custom groups in cBioPortal to match any criteria for patients.
Apr 12
matthews...@gmail.com
,
Nikolaus Schultz
2
Apr 11
Inquiry
Hi, We had a similar question here: https://groups.google.com/g/cbioportal/c/b-Jx_Hz2Gi8 I hope this
unread,
Inquiry
Hi, We had a similar question here: https://groups.google.com/g/cbioportal/c/b-Jx_Hz2Gi8 I hope this
Apr 11
dbondar
,
Nikolaus Schultz
2
Apr 11
Research Question about Gene Amplification in Lung Squamous Cell Carcinoma
Hi Diana, Unfortunately, we do not have answers to your question. The method that was used for the
unread,
Research Question about Gene Amplification in Lung Squamous Cell Carcinoma
Hi Diana, Unfortunately, we do not have answers to your question. The method that was used for the
Apr 11
Bana Alhaydar
,
jagn...@gmail.com
2
Apr 11
Group comparisons for different studies
Hi Bana, Thanks for contacting cBioPortal team. In your specific scenario, can you share the names of
unread,
Group comparisons for different studies
Hi Bana, Thanks for contacting cBioPortal team. In your specific scenario, can you share the names of
Apr 11
Dougherty, Brian
,
jagn...@gmail.com
2
Apr 11
cBioPortal user reported error
Hi Brain, Thanks for contacting cbioportal team. The link you provided gives the error. Can you share
unread,
cBioPortal user reported error
Hi Brain, Thanks for contacting cbioportal team. The link you provided gives the error. Can you share
Apr 11