CAVA v1.2.0 installation failed
Jose Antonio Aragon-Martin
Dear Sir/Madam,
I am trying to install your lovely NGS annotation called CAVA version 1.2 on my Mac by using the terminal but I am afraid I am not doing the right things at the moment because it came back with an "installation failed" message.
Please, is it possible to help me with this matter?
I am copying the message I get here:
1 warning generated.
pysam/TabProxies.c:2797:33: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
__pyx_t_4 = (__pyx_v_nbytes < 0);
~~~~~~~~~~~~~~ ^ ~
1 warning generated.
clang -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-x86_64-2.7/pysam/TabProxies.o -lz -o build/lib.macosx-10.6-x86_64-2.7/pysam/TabProxies.so
building 'pysam.cvcf' extension
clang -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -O2 -DNDEBUG -g -O3 -Itabix -I/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pysam/cvcf.c -o build/temp.macosx-10.6-x86_64-2.7/pysam/cvcf.o
clang -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -g build/temp.macosx-10.6-x86_64-2.7/pysam/cvcf.o -lz -o build/lib.macosx-10.6-x86_64-2.7/pysam/cvcf.so
/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/distutils/dist.py:267: UserWarning: Unknown distribution option: 'use_2to3'
warnings.warn(msg)
invalid command name '-'
rm: tmp: No such file or directory
rm: pysamdir: No such file or directory
================================================================================
CAVA v1.2.0 installation failed.
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to here
Thank you and best wishes,
Director of Sonalee Laboratory
PostDoc Research Scientist
Molecular and Clinical Sciences Research Institute
Cardiology CAG Research Centre
St. George's University of London
Cranmer Terrace
London SW17 0RE
Telephone: +44 (0)208-725 5885
Fax: +44(0)208-725 2653
website: https://www.researchgate.net/profile/Jose_Aragon-Martin/
