Refseq Annotation instead of Ensemble

[Sebastian G.]

Hi,

I have a question concerning the transcript database. Is there any possibility to get to an annotation with Refseq instead of Ensemble identifiers?

It seems that there is no direct way in CAVA for doing this, but I'm asking me the question, if it would work, when I generate a transcript database file with Refseq data, that has an equal shape.

Best regards,

Sebastian

[Shawn Yost]

Hi Sebastian,

Thank you for your question and for using CAVA.  Currently CAVA won't annotate based on RefSeq. We are working on creating a RefSeq associated database for CAVA and hope to have something soon. We will let you know when we have this available.

Thanks,

  Shawn