Dear All,
If you want to illustrate transitions between different conformations
(identified from cluster analysis), you may be interested in this how-to
which is based on using circos plots :
https://norma.mbg.duth.gr/index.php?id=research:howto:calculate_and_plot_frequencies_of_transitions_between_conformers
I attach an example plot with this message.
All the best,
Nicholas
--
Nicholas M. Glykos, Department of Molecular Biology
and Genetics, Democritus University of Thrace, University Campus,
Dragana, 68100 Alexandroupolis, Greece, Tel/Fax (office)
+302551030620,
Ext.77620, Tel (lab)
+302551030615,
https://utopia.duth.gr/glykos/