OAT class for use with NeuronMonitor()?
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Vladislav Sekulic
Feb 17, 2020, 11:45:47 PM2/17/20
to CARLsim: A GPU-accelerated Spiking Neural Network (SNN) Simulator
Hello,
I would like to be able to plot directly voltage values of multi-compartment Izhikevich models implemented in CARLsim4. As far as I can gather, this will require use of NeuronMonitor() to push model state variable data (v, u, i) to a binary for subsequent offline analysis using OAT (as per SpikeMonitor() -> SpikeReader.m). However, no corresponding class in OAT exists, at least in the current github code.
I wonder if there is some code related to this in existence already, e.g., whatever was used to plot Fig. 3B in the CARLsim4 paper (Chou et al 2018).
If not, I will try to write a “NeuronReader" class, using SpikeReader.m as a template.
Thank you!
Vlad
I would like to be able to plot directly voltage values of multi-compartment Izhikevich models implemented in CARLsim4. As far as I can gather, this will require use of NeuronMonitor() to push model state variable data (v, u, i) to a binary for subsequent offline analysis using OAT (as per SpikeMonitor() -> SpikeReader.m). However, no corresponding class in OAT exists, at least in the current github code.
I wonder if there is some code related to this in existence already, e.g., whatever was used to plot Fig. 3B in the CARLsim4 paper (Chou et al 2018).
If not, I will try to write a “NeuronReader" class, using SpikeReader.m as a template.
Thank you!
Vlad
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