Capnproto 0.7.0 error message

[Yao,Rong]

Greetings, Capnproto team,

 

I try to build software Mash 2.0, capnproto is one of its dependency package.

 

I am building capnproto 0.7.0 on RedHat 7.4. I use gcc/7.1.0, I use prefix to install to a non-standard location.

$ ./configure --prefix=/risapps/rhel7/capnproto/0.7.0

 

The make check has a failure

[ris_hpc_apps@r1drpswdev3 capnproto-c++-0.7.0]$ make -j6 check

    PASS: src/capnp/compiler/capnp-test.sh

FAIL: capnp-test

….

   -- I reviewed test-suite.log, seeing; please attached test-suite.log

     725 test(s) passed

    1 test(s) failed

    FAIL capnp-test (exit status: 1)

 

I proceeded with ‘make isntall’, it seems no error message and it generates bin, lib, include directory as expected.

 

However, when I build mash 2.0, I am seeing:

checking for capnp/common.h... no

configure: error: Cap'n Proto headers not found.

 

A google result finds out this link : https://github.com/marbl/Mash/issues/98

But I am confused about the fix part in the first reply message.

 

May you please provide me some suggestion?

 

Thanks!

Rong

 

--------------------------------------------------------------------------

Rong Yao

Applications Systems Analyst,  IT Operations – HPC team

1MC15.3548

University of Texas M.D. Anderson Cancer Center

7007 Bertner Avenue Houston, Texas 77030-3907

Email: ry...@mdanderson.org | Tel: (713) 563-2687

For assistance: http://hpcrequest

 

 

 

 

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[Yao,Rong]

Greetings, Capnproto team,

 

I verified that Mash 2.2 fixed the bug regarding to Cap’n Proto headers not found. I am able to build now. Please ignore my question.

 

Just one minor concern, I don’t think 1 failed capnproto test case matter, right?

 

Regards,

Rong

[Kenton Varda]

Hi Rong,

Yes, you can safely ignore this test failure... it is probably happening because you're using a filesystem that doesn't support sparse files, or supports them differently than what the test is looking for. Cap'n Proto doesn't actually need sparse files, but this test is testing some utility code that manipulates sparse files if they are available. We should probably fix this test so that it doesn't fail just because the filesystem doesn't have sparse files.

-Kenton

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[Yao,Rong]

Hello Kenton,

 

Thank you very much for your explanation.

 

Regards,

Rong

 

From: Kenton Varda <ken...@cloudflare.com>
Date: Tuesday, September 24, 2019 at 3:42 PM
To: "Yao,Rong" <RY...@mdanderson.org>
Cc: "capn...@googlegroups.com" <capn...@googlegroups.com>, "Wu,Xiaogang" <XW...@mdanderson.org>
Subject: [EXT] Re: [capnproto] Re: Capnproto 0.7.0 error message

 

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