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Hi Gavin,
as Steven said, the mixture fraction is defined as the mass fraction of fuel in the mixture (see e.g. https://en.wikipedia.org/wiki/Mixture_fraction). The equivalence ratio is the ratio of (amount of fuel / amount of oxidizer) to (amount of fuel / amount of oxidizer oxidizer) at stoichiometry (see e.g. https://en.wikipedia.org/wiki/Air%E2%80%93fuel_ratio#Fuel%E2%80%93air_equivalence_ratio_(%CF%95) ).
There is a relation between the two quantities, as shown here: https://cantera.org/documentation/docs-2.5/doxygen/html/dc/d38/classCantera_1_1ThermoPhase.html#a692731bce4f8d60bc76cb33c913ca0af (Z is the mixture fraction and Z_st the mixture fraction at stoichiometric conditions).
You can find more examples including both quantities here: https://github.com/Cantera/cantera/blob/main/interfaces/cython/cantera/examples/thermo/equivalenceRatio.py