Questions about generate WM by processed data

[Shuai Wang]

Hi Yuchao,

I am interested in using the Canopy method to construct a phylogenetic tree using publicly available data. However, I have noticed that some of the data do not directly provide results from mutation calling software, but rather results compiled by the author. I have attached a figure to illustrate my point.

My question is, if I only have copy number information for different samples, is it possible to convert it into the format required by Canopy? 

I was thinking of using a rough method to force all samples to have the same copy number region. Could you please advise me on this?

Thank you!