Assuming there's an InnerProduct layer with num_output: 1000 and it produces a blob "dense", you should do something like this:
layer {
type: "Slice"
name: "slice"
bottom: "dense"
top: "dense1"
top: "dense2"
slice_param {
axis: 1 #slice along dimension 1 - could be omitted since 1 is a default value
slice_point: 500 #slice at index 500; indices [0-499] will go to dense1, while [500-...] to dense2
}
}
A 32x1000 blob will be cut into 32x500 and 32x500 blobs. A 64x700x2 blob will be cut into 64x500x2 and 64x200x2. A 1x100 blob will error out.