make matcaffe fails on Mac OS X 10.8.x matlab 2014a

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Steven Lobo

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Aug 24, 2014, 2:22:54 PM8/24/14

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I am newbie to caffe. I followed http://caffe.berkeleyvision.org/installation.html to install all necessary tools using brew. I did make all , make test, make runtest.

But I am not able to create matalab library using make matcaffe. I am getting following error. I followed the steps mentioned in https://github.com/BVLC/caffe/issues/915 and changed

LIB_DIR. But then too I am getting below error. Anybody suggest how to fix this.

Steven

/Applications/MATLAB_R2014a.app/bin/mex matlab/caffe/matcaffe.cpp \

CXX="/usr/bin/clang++" \

CXXFLAGS="\$CXXFLAGS -pthread -fPIC -DNDEBUG -O2 -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/local/include -I.build_release/src -I./src -I./include -I/usr/local/cuda/include -I/System/Library/Frameworks/vecLib.framework/Versions/Current/Headers/ -Wall -Wno-sign-compare -Wno-unneeded-internal-declaration -Wno-uninitialized" \

CXXLIBS="\$CXXLIBS .build_release/lib/libcaffe.a -framework vecLib -L/usr/lib -L/Applications/MATLAB_R2014a.app/bin/maci64 -L/usr/local/lib -L/usr/lib -L/usr/local/cuda/lib64 -L/usr/local/cuda/lib -lcudart -lcublas -lcurand -lglog -lgflags -lpthread -lprotobuf -lleveldb -lsnappy -llmdb -lboost_system -lhdf5_hl -lhdf5 -lopencv_core -lopencv_highgui -lopencv_imgproc -lcblas" -output matlab/caffe/caffe.mexmaci64

Building with 'Xcode Clang++'.

ld: warning: directory not found for option '-L/usr/local/cuda/lib64'

Undefined symbols for architecture x86_64:

"_mxArrayToString", referenced from:

init(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

read_mean(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

_mexFunction in matcaffe.o

"_mxCreateCellArray_700", referenced from:

get_weights(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

"_mxCreateCellMatrix_700", referenced from:

forward(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

backward(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

"_mxCreateDoubleScalar", referenced from:

init(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

is_initialized(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

get_init_key(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

"_mxCreateNumericArray_700", referenced from:

forward(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

backward(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

get_weights(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

read_mean(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

"_mxCreateString", referenced from:

get_weights(int, mxArray_tag**, int, mxArray_tag const**) in matcaffe.o

…

Sergio Guadarrama

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Aug 29, 2014, 11:27:09 AM8/29/14

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Have you exported the Dir?

Julie Dequaire

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Jan 21, 2015, 6:16:05 AM1/21/15

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hey Steven,

Have you been able to figure out the problem in your build ? I'm getting a similar issue that I haven't been able to fix ( I have built the boost library and all other ones mentioned in the Caffe Install with libstdc++ so I don't get why I'm having that undefined symbol error):

➜ src make matcaffe

/Applications/MATLAB_R2014a.app/bin/mex matlab/caffe/matcaffe.cpp \

CXX="/usr/bin/clang++" \

CXXFLAGS="\$CXXFLAGS -stdlib=libstdc++ -pthread -fPIC -DNDEBUG -O2 -I/usr/include/python2.7 -I/usr/local/Cellar/numpy/1.9.1/lib/python2.7/site-packages/numpy/core/include/numpy -I/usr/local/include -I.build_release/src -I./src -I./include -I/usr/local/cuda/include -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk/System/Library/Frameworks/Accelerate.framework/Versions/Current/Frameworks/vecLib.framework/Headers/ -Wall -Wno-sign-compare -Wno-unneeded-internal-declaration -Wno-uninitialized" \

CXXLIBS="\$CXXLIBS .build_release/lib/libcaffe.a -framework Accelerate -L/usr/lib -L/usr/local/lib -L/Applications/MATLAB_R2014a.app/bin/maci64 -L/usr/lib -L/usr/local/cuda/lib -lcudart -lcublas -lcurand -lglog -lgflags -lprotobuf -lleveldb -lsnappy -llmdb -lboost_system -lhdf5_hl -lhdf5 -lopencv_core -lopencv_highgui -lopencv_imgproc -lpthread -lboost_thread-mt -lcblas" -output matlab/caffe/caffe.mexmaci64

Building with 'Xcode Clang++'.

Undefined symbols for architecture x86_64:

"std::string::find(char, unsigned long) const", referenced from:

boost::basic_format<char, std::char_traits<char>, std::allocator<char> >::parse(std::string const&) in libcaffe.a(math_functions.o)

int boost::io::detail::upper_bound_from_fstring<std::string, std::ctype<char> >(std::string const&, std::string::value_type, std::ctype<char> const&, unsigned char) in libcaffe.a(math_functions.o)

"std::string::compare(char const*) const", referenced from:

_mexFunction in matcaffe.o

caffe::UpgradeV0PaddingLayers(caffe::NetParameter const&, caffe::NetParameter*) in libcaffe.a(upgrade_proto.o)

caffe::UpgradeLayerParameter(caffe::LayerParameter const&, caffe::LayerParameter*) in libcaffe.a(upgrade_proto.o)

caffe::UpgradeV0LayerType(std::string const&) in libcaffe.a(upgrade_proto.o)

caffe::Filler<float>* caffe::GetFiller<float>(caffe::FillerParameter const&) in libcaffe.a(dummy_data_layer.o)

caffe::Filler<double>* caffe::GetFiller<double>(caffe::FillerParameter const&) in libcaffe.a(dummy_data_layer.o)

caffe::WindowDataLayer<float>::DataLayerSetUp(std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> > const&, std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> >*) in libcaffe.a(window_data_layer.o)

...

"std::__basic_file<char>::is_open() const", referenced from:

caffe::HDF5DataLayer<float>::LayerSetUp(std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> > const&, std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> >*) in libcaffe.a(hdf5_data_layer.o)

caffe::HDF5DataLayer<double>::LayerSetUp(std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> > const&, std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> >*) in libcaffe.a(hdf5_data_layer.o)

"std::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::str() const", referenced from:

caffe::Net<float>::AppendParam(caffe::NetParameter const&, int, int) in libcaffe.a(net.o)

caffe::Net<double>::AppendParam(caffe::NetParameter const&, int, int) in libcaffe.a(net.o)

caffe::SplitBlobName(std::string const&, std::string const&, int, int) in libcaffe.a(insert_splits.o)

caffe::SplitLayerName(std::string const&, std::string const&, int) in libcaffe.a(insert_splits.o)

"std::basic_ios<char, std::char_traits<char> >::widen(char) const", referenced from:

void boost::io::detail::put<char, std::char_traits<char>, std::allocator<char>, char const* const&>(char const* const&, boost::io::detail::format_item<char, std::char_traits<char>, std::allocator<char> > const&, boost::basic_format<char, std::char_traits<char>, std::allocator<char> >::string_type&, boost::basic_format<char, std::char_traits<char>, std::allocator<char> >::internal_streambuf_t&, std::locale*) in libcaffe.a(math_functions.o)

boost::io::detail::stream_format_state<char, std::char_traits<char> >::apply_on(std::basic_ios<char, std::char_traits<char> >&, std::locale*) const in libcaffe.a(math_functions.o)

void boost::io::detail::put<char, std::char_traits<char>, std::allocator<char>, boost::io::detail::group1<boost::io::detail::group2<std::_Setprecision, double const&> > const&>(boost::io::detail::group1<boost::io::detail::group2<std::_Setprecision, double const&> > const&, boost::io::detail::format_item<char, std::char_traits<char>, std::allocator<char> > const&, boost::basic_format<char, std::char_traits<char>, std::allocator<char> >::string_type&, boost::basic_format<char, std::char_traits<char>, std::allocator<char> >::internal_streambuf_t&, std::locale*) in libcaffe.a(math_functions.o)

void boost::io::detail::put<char, std::char_traits<char>, std::allocator<char>, boost::io::detail::group1<boost::io::detail::group2<std::_Setprecision, float const&> > const&>(boost::io::detail::group1<boost::io::detail::group2<std::_Setprecision, float const&> > const&, boost::io::detail::format_item<char, std::char_traits<char>, std::allocator<char> > const&, boost::basic_format<char, std::char_traits<char>, std::allocator<char> >::string_type&, boost::basic_format<char, std::char_traits<char>, std::allocator<char> >::internal_streambuf_t&, std::locale*) in libcaffe.a(math_functions.o)

caffe::Net<float>::Init(caffe::NetParameter const&) in libcaffe.a(net.o)

caffe::Net<double>::Init(caffe::NetParameter const&) in libcaffe.a(net.o)

...

"std::istream& std::istream::_M_extract<float>(float&)", referenced from:

caffe::WindowDataLayer<double>::DataLayerSetUp(std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> > const&, std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> >*) in libcaffe.a(window_data_layer.o)

"std::istream::operator>>(int&)", referenced from:

caffe::ImageDataLayer<float>::DataLayerSetUp(std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> > const&, std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> >*) in libcaffe.a(image_data_layer.o)

caffe::ImageDataLayer<double>::DataLayerSetUp(std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> > const&, std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> >*) in libcaffe.a(image_data_layer.o)

"std::ostream::put(char)", referenced from:

caffe::Net<float>::Init(caffe::NetParameter const&) in libcaffe.a(net.o)

caffe::Net<double>::Init(caffe::NetParameter const&) in libcaffe.a(net.o)

caffe::DataLayer<float>::DataLayerSetUp(std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> > const&, std::vector<caffe::Blob<float>*, std::allocator<caffe::Blob<float>*> >*) in libcaffe.a(data_layer.o)

caffe::DataLayer<double>::DataLayerSetUp(std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> > const&, std::vector<caffe::Blob<double>*, std::allocator<caffe::Blob<double>*> >*) in libcaffe.a(data_layer.o)

"std::ostream::flush()", referenced from:

caffe::Net<float>::Init(caffe::NetParameter const&) in libcaffe.a(net.o)

caffe::Net<double>::Init(caffe::NetParameter const&) in libcaffe.a(net.o)

caffe::DataLayer<float>::DataLayerSetUp(std::vector

make: *** [matlab/caffe/caffe.mexmaci64] Error 255

梁超

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Aug 27, 2017, 4:42:16 AM8/27/17

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hi @Steven Lobo , Have you been able to figure out the problem ? I got the same problem...

在 2014年8月25日星期一 UTC+8上午2:22:54，Steven Lobo写道：

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