+------------------------------------------------------+
| NVIDIA-SMI 352.55 Driver Version: 352.55 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 GeForce GTX 470 Off | 0000:02:00.0 N/A | N/A |
| 40% 62C P12 N/A / N/A | 61MiB / 1279MiB | N/A Default |
+-------------------------------+----------------------+----------------------+
| 1 GeForce GTX TIT... Off | 0000:03:00.0 Off | N/A |
| 22% 41C P2 79W / 250W | 211MiB / 12287MiB | 34% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| 0 Not Supported |
| 1 4444 C caffe 186MiB |
+-----------------------------------------------------------------------------+
And no, system indexing is not the same as caffe indexing. For example, by default caffe uses gpu=0, but, as one can see, it has index in the output.