Change default location of protobuf and opencv

[M@y]

I had this problem (https://groups.google.com/forum/#!topic/caffe-users/OgpbyHvmqwM) so I compiled manually protobuf and opencv into 2 specific folders and I've added the paths to those directories into Makefile.config so caffe can find them while compiling it:

INCLUDE_DIRS := $(PYTHON_INCLUDE) /usr/local/OpenCV/include /usr/local/protobuf-Test/include /usr/local/include  /usr/include/hdf5/serial/

LIBRARY_DIRS := $(PYTHON_LIB) /usr/local/OpenCV/lib/ /usr/local/protobuf-Test/lib /usr/local/lib /usr/lib  /usr/lib/x86_64-linux-gnu/hdf5/serial/ 

 but I'm still getting the same problem:

AR -o .build_release/lib/libcaffe.a

LD -o .build_release/lib/libcaffe.so.1.0.0-rc3

CXX tools/upgrade_solver_proto_text.cpp

CXX/LD -o .build_release/tools/upgrade_solver_proto_text.bin

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::Message::InitializationErrorString() const »

.build_release/lib/libcaffe.so: undefined reference to « caffe::BlockingQueue<caffe::Batch<double>*>::pop(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::WireFormatLite::WriteStringMaybeAliased(int, std::string const&, google::protobuf::io::CodedOutputStream*) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::io::CodedOutputStream::WriteStringWithSizeToArray(std::string const&, unsigned char*) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::WireFormatLite::ReadString(google::protobuf::io::CodedInputStream*, std::string*) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::Message::GetTypeName() const »

.build_release/lib/libcaffe.so: undefined reference to « google::base::CheckOpMessageBuilder::NewString() »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::Message::DebugString() const »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::empty_string_ »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::MessageLite::ParseFromString(std::string const&) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::NameOfEnum(google::protobuf::EnumDescriptor const*, int) »

.build_release/lib/libcaffe.so: undefined reference to « cv::imread(std::string const&, int) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::DescriptorPool::FindFileByName(std::string const&) const »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::WireFormatLite::ReadBytes(google::protobuf::io::CodedInputStream*, std::string*) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::StringTypeHandlerBase::Delete(std::string*) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::MessageFactory::InternalRegisterGeneratedFile(char const*, void (*)(std::string const&)) »

.build_release/lib/libcaffe.so: undefined reference to « leveldb::DB::Open(leveldb::Options const&, std::string const&, leveldb::DB**) »

.build_release/lib/libcaffe.so: undefined reference to « cv::imencode(std::string const&, cv::_InputArray const&, std::vector<unsigned char, std::allocator<unsigned char> >&, std::vector<int, std::allocator<int> > const&) »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::StringTypeHandlerBase::New() »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::WireFormatLite::WriteBytesMaybeAliased(int, std::string const&, google::protobuf::io::CodedOutputStream*) »

.build_release/lib/libcaffe.so: undefined reference to « caffe::BlockingQueue<caffe::Batch<float>*>::pop(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) »

.build_release/lib/libcaffe.so: undefined reference to « leveldb::Status::ToString() const »

.build_release/lib/libcaffe.so: undefined reference to « google::protobuf::internal::WireFormatLite::WriteString(int, std::string const&, google::protobuf::io::CodedOutputStream*) »

So I double checked the linking to libcaffe.so by running this command: ldd -d .build_release/lib/libcaffe.so and here is the result:

linux-vdso.so.1 =>  (0x00007ffff0bf9000)

libcudart.so.8.0 => not found

libcublas.so.8.0 => not found

libcurand.so.8.0 => not found

libglog.so.0 => /usr/lib/x86_64-linux-gnu/libglog.so.0 (0x00007f696b829000)

libprotobuf.so.9 => /usr/lib/x86_64-linux-gnu/libprotobuf.so.9 (0x00007f696b50b000)

libboost_system.so.1.58.0 => /usr/lib/x86_64-linux-gnu/libboost_system.so.1.58.0 (0x00007f696b306000)

libhdf5_serial_hl.so.10 => /usr/lib/x86_64-linux-gnu/libhdf5_serial_hl.so.10 (0x00007f696b0e6000)

libhdf5_serial.so.10 => /usr/lib/x86_64-linux-gnu/libhdf5_serial.so.10 (0x00007f696ac49000)

libleveldb.so.1 => /usr/lib/x86_64-linux-gnu/libleveldb.so.1 (0x00007f696a9ee000)

liblmdb.so => /usr/local/lib/liblmdb.so (0x00007f696a7d9000)

libopencv_core.so.2.4 => not found

libopencv_highgui.so.2.4 => not found

libopencv_imgproc.so.2.4 => not found

libboost_thread.so.1.58.0 => /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.58.0 (0x00007f696a5b2000)

libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 (0x00007f696a22f000)

libcblas.so.3 => /usr/lib/libcblas.so.3 (0x00007f696a00d000)

libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007f6969d04000)

libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007f6969aed000)

libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007f69698d0000)

libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f6969507000)

libgflags.so.2 => /usr/lib/x86_64-linux-gnu/libgflags.so.2 (0x00007f69692e5000)

libunwind.so.8 => /usr/lib/x86_64-linux-gnu/libunwind.so.8 (0x00007f69690ca000)

libz.so.1 => /lib/x86_64-linux-gnu/libz.so.1 (0x00007f6968eb0000)

libsz.so.2 => /usr/lib/x86_64-linux-gnu/libsz.so.2 (0x00007f6968cac000)

libdl.so.2 => /lib/x86_64-linux-gnu/libdl.so.2 (0x00007f6968aa8000)

libsnappy.so.1 => /usr/lib/x86_64-linux-gnu/libsnappy.so.1 (0x00007f69688a0000)

librt.so.1 => /lib/x86_64-linux-gnu/librt.so.1 (0x00007f6968697000)

/lib64/ld-linux-x86-64.so.2 (0x0000561cfc53e000)

libatlas.so.3 => /usr/lib/libatlas.so.3 (0x00007f69680f9000)

libgfortran.so.3 => /usr/lib/x86_64-linux-gnu/libgfortran.so.3 (0x00007f6967dcd000)

liblzma.so.5 => /lib/x86_64-linux-gnu/liblzma.so.5 (0x00007f6967bab000)

libaec.so.0 => /usr/lib/x86_64-linux-gnu/libaec.so.0 (0x00007f69679a2000)

libquadmath.so.0 => /usr/lib/x86_64-linux-gnu/libquadmath.so.0 (0x00007f6967763000)

undefined symbol: _ZNK6google8protobuf7Message11GetTypeNameEv (.build_release/lib/libcaffe.so)

undefined symbol: _ZNK6google8protobuf7Message25InitializationErrorStringEv (.build_release/lib/libcaffe.so)

undefined symbol: _ZN6google8protobuf8internal13empty_string_E (.build_release/lib/libcaffe.so)

undefined symbol: _ZTVN2cv11_InputArrayE (.build_release/lib/libcaffe.so)

It's clear that it didn't find opencv libraries and it's linked to the wrong version of libprotobuf. It seems to me that I didn't properly tell the library how to use the new paths of both libraries. Is there anyone that have any clue on how this can be done?

Thanks.