Random segmentation fault (11) running (Py)Caffe on OS X 10.11.3
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Roy van Rijn
Mar 2, 2016, 7:02:24 AM3/2/16
to Caffe Users
Hi all,
I've been trying to get Caffe to work reliably my MacBook for a while now, I've tried all the various tutorials/guides and have played with all of the compilation settings.
For some reason, when running Caffe I get a segmentation fault at random moments in time.
When I run "make runtest" everything works fine and finishes correctly. But when using Caffe it works fine initially, sometimes I'm able to play with it for a little while.
But sooner or later the following fault will happen:
caffe::PoolingLayer<float>::Backward_cpu(std::__1::vector<caffe::Blob<float>*, std::__1::allocator<caffe::Blob<float>*> > const&, std::__1::vector<bool, std::__1::allocator<bool> > const&, std::__1::vector<caffe::Blob<float>*, std::__1::allocator<caffe::Blob<float>*> > const&) + 1462
Always at the same location. Here is the complete crash report:
Process: Python [51821]
Path: /usr/local/Cellar/python/2.7.11/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier: org.python.python
Version: 2.7.11 (2.7.11)
Code Type: X86-64 (Native)
Parent Process: bash [36369]
Responsible: Terminal [629]
User ID: 501
Date/Time: 2016-03-02 12:49:17.583 +0100
OS Version: Mac OS X 10.11.3 (15D21)
Report Version: 11
Anonymous UUID: 26B4EB50-27E2-80EF-CBA2-13614CCF2755
Sleep/Wake UUID: 4FAE1FC7-6EC3-4C19-B21E-64AC11BB9104
Time Awake Since Boot: 77000 seconds
Time Since Wake: 15000 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x000000012d15fffc
VM Regions Near 0x12d15fffc:
MALLOC_LARGE 000000012b817000-000000012d0fe000 [ 24.9M] rw-/rwx SM=PRV
-->
MALLOC_LARGE 000000012d160000-000000012d946000 [ 8088K] rw-/rwx SM=PRV
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libcaffe.so.1.0.0-rc3 0x000000010e7c3906 caffe::PoolingLayer<float>::Backward_cpu(std::__1::vector<caffe::Blob<float>*, std::__1::allocator<caffe::Blob<float>*> > const&, std::__1::vector<bool, std::__1::allocator<bool> > const&, std::__1::vector<caffe::Blob<float>*, std::__1::allocator<caffe::Blob<float>*> > const&) + 1462
1 libcaffe.so.1.0.0-rc3 0x000000010e7f2290 caffe::Net<float>::BackwardFromTo(int, int) + 496
2 _caffe.so 0x000000010e59d034 boost::python::detail::caller_arity<3u>::impl<void (caffe::Net<float>::*)(int, int), boost::python::default_call_policies, boost::mpl::vector4<void, caffe::Net<float>&, int, int> >::operator()(_object*, _object*) + 244
3 libboost_python.dylib 0x000000010f31d27a boost::python::objects::function::call(_object*, _object*) const + 762
4 libboost_python.dylib 0x000000010f31f18a boost::detail::function::void_function_ref_invoker0<boost::python::objects::(anonymous namespace)::bind_return, void>::invoke(boost::detail::function::function_buffer&) + 26
5 libboost_python.dylib 0x000000010f325361 boost::python::handle_exception_impl(boost::function0<void>) + 81
6 libboost_python.dylib 0x000000010f31ee23 boost::python::objects::function_call(_object*, _object*, _object*) + 83
7 org.python.python 0x000000010caf0eb0 PyObject_Call + 99
8 org.python.python 0x000000010cb70a27 PyEval_EvalFrameEx + 26436
9 org.python.python 0x000000010cb6a0f1 PyEval_EvalCodeEx + 1583
10 org.python.python 0x000000010cb7469a fast_function + 117
11 org.python.python 0x000000010cb70af3 PyEval_EvalFrameEx + 26640
12 org.python.python 0x000000010cb6a0f1 PyEval_EvalCodeEx + 1583
13 org.python.python 0x000000010cb0efb1 function_call + 352
14 org.python.python 0x000000010caf0eb0 PyObject_Call + 99
15 org.python.python 0x000000010cb71294 PyEval_EvalFrameEx + 28593
16 org.python.python 0x000000010cb6a0f1 PyEval_EvalCodeEx + 1583
17 org.python.python 0x000000010cb7469a fast_function + 117
18 org.python.python 0x000000010cb70af3 PyEval_EvalFrameEx + 26640
19 org.python.python 0x000000010cb7472d fast_function + 264
20 org.python.python 0x000000010cb70af3 PyEval_EvalFrameEx + 26640
21 org.python.python 0x000000010cb6a0f1 PyEval_EvalCodeEx + 1583
22 org.python.python 0x000000010cb69abc PyEval_EvalCode + 54
23 org.python.python 0x000000010cb8dea1 run_mod + 53
24 org.python.python 0x000000010cb8df44 PyRun_FileExFlags + 133
25 org.python.python 0x000000010cb8da93 PyRun_SimpleFileExFlags + 698
26 org.python.python 0x000000010cb9f445 Py_Main + 3137
27 libdyld.dylib 0x00007fff9e61a5ad start + 1
Thread 1:
0 libsystem_kernel.dylib 0x00007fff9f06a6de __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff9b256729 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff9b254365 start_wqthread + 13
Thread 2:: Dispatch queue: com.apple.libdispatch-manager
0 libsystem_kernel.dylib 0x00007fff9f06aff6 kevent_qos + 10
1 libdispatch.dylib 0x00007fff9a562099 _dispatch_mgr_invoke + 216
2 libdispatch.dylib 0x00007fff9a561d01 _dispatch_mgr_thread + 52
Thread 3:
0 libsystem_kernel.dylib 0x00007fff9f06a6de __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff9b256729 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff9b254365 start_wqthread + 13
Thread 4:
0 libsystem_kernel.dylib 0x00007fff9f06a6de __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff9b256729 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff9b254365 start_wqthread + 13
Thread 5:
0 libsystem_kernel.dylib 0x00007fff9f06a6de __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff9b256729 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff9b254365 start_wqthread + 13
Thread 6:
0 libsystem_kernel.dylib 0x00007fff9f06a6de __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff9b256729 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff9b254365 start_wqthread + 13
Thread 7:
0 libsystem_kernel.dylib 0x00007fff9f06a6de __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff9b256729 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff9b254365 start_wqthread + 13
Thread 8:
0 libsystem_kernel.dylib 0x00007fff9f06a6de __workq_kernreturn + 10
1 libsystem_pthread.dylib 0x00007fff9b256729 _pthread_wqthread + 1283
2 libsystem_pthread.dylib 0x00007fff9b254365 start_wqthread + 13
Thread 0 crashed with X86 Thread State (64-bit):
rax: 0x0000000000000000 rbx: 0x000000012cd2a000 rcx: 0x0000000000000008 rdx: 0xffffffffffffffff
rdi: 0x0000000000000000 rsi: 0x000000012d160000 rbp: 0x00007fff53120570 rsp: 0x00007fff53120480
r8: 0x0000000000000005 r9: 0x0000000000000000 r10: 0x0000000000000000 r11: 0x00007f8b82f00000
r12: 0x0000000000000001 r13: 0x00007f8b8595a210 r14: 0x000000012bd00000 r15: 0x0000000000000000
rip: 0x000000010e7c3906 rfl: 0x0000000000010297 cr2: 0x000000012d15fffc
Logical CPU: 0
Error Code: 0x00000004
Trap Number: 14
Binary Images:
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0x7fff9e916000 - 0x7fff9e921fff libGL.dylib (12.0.40.6) <2A13E40A-BFA1-34FD-925A-C7023FEF254C> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
0x7fff9ea0e000 - 0x7fff9ea28ff3 liblzma.5.dylib (10) <CC03591B-FA57-3CA5-AC81-0D76033AC0CE> /usr/lib/liblzma.5.dylib
0x7fff9efcd000 - 0x7fff9f00eff7 libGLU.dylib (12.0.40.6) <1C9899B5-4741-340F-A2D7-F9AF03B42A47> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.dylib
0x7fff9f011000 - 0x7fff9f02dff3 libresolv.9.dylib (60) <A650B5C8-1950-36A0-86D1-0B2465318BFA> /usr/lib/libresolv.9.dylib
0x7fff9f02e000 - 0x7fff9f030ff7 libquarantine.dylib (80) <163CF63A-7455-3D1F-AE57-8C4475A9204C> /usr/lib/system/libquarantine.dylib
0x7fff9f053000 - 0x7fff9f071fff libsystem_kernel.dylib (3248.30.4) <9CEB6C3B-1CAF-3C32-A9FD-93BC72CBCEA1> /usr/lib/system/libsystem_kernel.dylib
0x7fff9f091000 - 0x7fff9f099fff libcopyfile.dylib (127) <F5133269-0B22-388C-A57C-079667B6291E> /usr/lib/system/libcopyfile.dylib
0x7fff9f17e000 - 0x7fff9f17efff libenergytrace.dylib (10) <A4AE7CBD-CF0A-3A74-8098-B642CE496611> /usr/lib/libenergytrace.dylib
0x7fff9f631000 - 0x7fff9f63ffff com.apple.opengl (12.0.40 - 12.0.40) <D37D88AE-0731-3105-99AB-984DA9B9BCE6> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x7fff9f650000 - 0x7fff9f935ff3 com.apple.CoreServices.CarbonCore (1136 - 1136) <FFBDE3BF-0BB3-37A2-8A44-6E25284CC348> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/CarbonCore.framework/Versions/A/CarbonCore
0x7fff9fa00000 - 0x7fff9fa29fff libc++abi.dylib (125) <DCCC8177-3D09-35BC-9784-2A04FEC4C71B> /usr/lib/libc++abi.dylib
0x7fff9fa50000 - 0x7fff9fa50fff libmetal_timestamp.dylib (600.0.43.5) <4BA5B935-F932-3863-9B31-EF0A7DEAF15C> /System/Library/PrivateFrameworks/GPUCompiler.framework/libmetal_timestamp.dylib
0x7fff9fb39000 - 0x7fff9fb55fff com.apple.GenerationalStorage (2.0 - 239) <EE667C63-3ADF-34D3-A8A7-316B66C7E290> /System/Library/PrivateFrameworks/GenerationalStorage.framework/Versions/A/GenerationalStorage
0x7fff9fb98000 - 0x7fff9fbf5fff com.apple.CoreServices.OSServices (728.6 - 728.6) <CA616ACB-A872-386C-B16D-193A7E495C4D> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/OSServices.framework/Versions/A/OSServices
0x7fff9fc29000 - 0x7fff9fdcfff7 com.apple.audio.toolbox.AudioToolbox (1.13 - 1.13) <F912765D-88ED-3324-B512-3778A8CE878B> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbox
0x7fff9fde7000 - 0x7fff9fdeafff libCoreVMClient.dylib (119.5) <CD7DE25C-D7AD-3ECD-BEEC-F57992A4A08E> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libCoreVMClient.dylib
0x7fff9fdeb000 - 0x7fff9fe31ff7 libauto.dylib (186) <999E610F-41FC-32A3-ADCA-5EC049B65DFB> /usr/lib/libauto.dylib
0x7fff9fe32000 - 0x7fff9fe4eff7 libsystem_malloc.dylib (67) <9EECAB18-F025-34C4-8E32-7EFFA6720EFC> /usr/lib/system/libsystem_malloc.dylib
0x7fff9fe4f000 - 0x7fffa005afff libFosl_dynamic.dylib (16.24) <363B7CEE-B662-32F3-9D7B-245E64927C35> /usr/lib/libFosl_dynamic.dylib
0x7fffa005b000 - 0x7fffa00a0ff7 com.apple.coreservices.SharedFileList (24.4 - 24.5) <72156BE7-0804-3F90-9AF9-14C4739430C2> /System/Library/Frameworks/CoreServices.framework/Versions/A/Frameworks/SharedFileList.framework/Versions/A/SharedFileList
0x7fffa011f000 - 0x7fffa0148fff libsystem_info.dylib (477.20.1) <6513635B-4ADE-3B45-BF63-ED7AC565B0C9> /usr/lib/system/libsystem_info.dylib
0x7fffa01a2000 - 0x7fffa01a6fff libcache.dylib (75) <6B245C0A-F3EA-383B-A542-5B0D0456A41B> /usr/lib/system/libcache.dylib
0x7fffa01a7000 - 0x7fffa01adff7 com.apple.speech.recognition.framework (5.1.1 - 5.1.1) <FA5CB89A-2BFE-38CC-B1A3-E48792CD898C> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/SpeechRecognition.framework/Versions/A/SpeechRecognition
0x7fffa01ae000 - 0x7fffa0529ffb com.apple.VideoToolbox (1.0 - 1731.15.33) <33AED54A-87AE-330F-BAAD-FB8389C3E686> /System/Library/Frameworks/VideoToolbox.framework/Versions/A/VideoToolbox
External Modification Summary:
Calls made by other processes targeting this process:
task_for_pid: 1
thread_create: 0
thread_set_state: 0
Calls made by this process:
task_for_pid: 0
thread_create: 0
thread_set_state: 0
Calls made by all processes on this machine:
task_for_pid: 55402
thread_create: 0
thread_set_state: 0
VM Region Summary:
ReadOnly portion of Libraries: Total=279.7M resident=0K(0%) swapped_out_or_unallocated=279.7M(100%)
Writable regions: Total=1.0G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.0G(100%)
VIRTUAL REGION
REGION TYPE SIZE COUNT (non-coalesced)
=========== ======= =======
Activity Tracing 2048K 2
CG shared images 144K 4
CoreUI image file 128K 2
Dispatch continuations 16.0M 2
Kernel Alloc Once 8K 3
MALLOC 976.7M 84
MALLOC guard page 32K 7
STACK GUARD 56.0M 10
Stack 11.6M 10
VM_ALLOCATE 25.5M 58
__DATA 22.9M 411
__IMAGE 528K 2
__LINKEDIT 102.5M 171
__TEXT 177.2M 375
__UNICODE 552K 2
mapped file 32.5M 4
shared memory 328K 10
=========== ======= =======
TOTAL 1.4G 1140
The same error keeps happening, even with different versions of Python and different versions of boost (which I know can cause problems on OS X).
I've made sure there is only a single version of Python loaded using homebrew (just 2.7.11).
The weird thing IMHO is that sometimes it works correctly, and sometimes it doesn't.... any ideas?
Roy
malegro
Nov 23, 2016, 7:18:44 PM11/23/16
to Caffe Users
HI! I've having the same problem? Did you find a solution?
Thks
...
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