Caffe installation with Anaconda Python: libglogs libgflags error

[Truong Dang Manh]

Hi I'm trying to install Caffe with Anaconda Python wrapper, here is my Makefile.config (I only include parts that I have modified myself):

# CPU-only switch (uncomment to build without GPU support).
CPU_ONLY := 1

# NOTE: this is required only if you will compile the python interface.
# We need to be able to find Python.h and numpy/arrayobject.h.
#PYTHON_INCLUDE := /usr/include/python2.7 \
#        /usr/lib/python2.7/dist-packages/numpy/core/include
# Anaconda Python distribution is quite popular. Include path:
# Verify anaconda location, sometimes it's in root.
ANACONDA_HOME := $(HOME)/anaconda2
PYTHON_INCLUDE := $(ANACONDA_HOME)/include \
          $(ANACONDA_HOME)/include/python2.7 \
          $(ANACONDA_HOME)/lib/python2.7/site-packages/numpy/core/include \

# We need to be able to find libpythonX.X.so or .dylib.
#PYTHON_LIB := /usr/lib
PYTHON_LIB := $(ANACONDA_HOME)/lib

But when I make all, I got this cryptic error:

AR -o .build_release/lib/libcaffe.a
LD -o .build_release/lib/libcaffe.so.1.0.0-rc3
CXX tools/device_query.cpp
CXX/LD -o .build_release/tools/device_query.bin
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace_aux(unsigned long, unsigned long, unsigned long, char)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct(unsigned long, char)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `vtable for std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_assign(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_erase(unsigned long, unsigned long)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `vtable for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned long)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__throw_out_of_range_fmt(char const*, ...)@GLIBCXX_3.4.20'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::rfind(char, unsigned long) const@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >::_M_sync(char*, unsigned long, unsigned long)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char, unsigned long) const@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >::~basic_ostringstream()@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `VTT for std::__cxx11::basic_ostringstream<char, std::char_traits<char>, std::allocator<char> >@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libgflags.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::find(char const*, unsigned long, unsigned long) const@GLIBCXX_3.4.21'
/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu/libglog.so: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::compare(char const*) const@GLIBCXX_3.4.21'
collect2: error: ld returned 1 exit status
Makefile:619: recipe for target '.build_release/tools/device_query.bin' failed
make: *** [.build_release/tools/device_query.bin] Error 1

And when I installed the prerequisites as described in the official Caffe tutorial, I did this:

sudo apt-get install --no-install-recommends libboost-all-dev
But then I did this :
sudo apt-get install libboost-all-dev
(according to : https://gist.github.com/titipata/f0ef48ad2f0ebc07bcb9)
Maybe this part was the reason behind this error? :( . Anyway, I don't know for sure, please help me, thank you very much :(

[ohad volvo]

Hi,

I have encountered in a similar problem, I would like to know if and how you solved it

Thanks,

Ohad

בתאריך יום שבת, 1 באוקטובר 2016 בשעה 13:35:25 UTC+3, מאת Truong Dang Manh: