Error importing Caffe in Python

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Mohit Jain

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May 27, 2015, 3:41:59 PM5/27/15
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I'm facing problems trying to import caffe in my python prompt. Any solutions to this problem would really be appreciated. I've tried out most of the solutions posted on various forums across the internet.

System:

MacBook Pro
MAC OSX 10.10.3

make all, test, runtest, pycaffe, distribute (ran with no errors) (Installed with CPU_ONLY:=1)
[Using my system python - and not Anaconda]

Soln-1:

Generally, setting the PYTHONPATH is what most people forget and land in trouble. My PYTHONPATH variable looks like this.
export PYTHONPATH="<Caffe-Home>/caffe/python:$PYTHONPATH"

Error : 
The python command (on using 'import caffe') prompt freezes for a few seconds and returns with a "segmentation fault: 11" error message with the complete log as pasted below (at the bottom).

Soln-2:

I've also tried the distribute version.
export PYTHONPATH="<Caffe-home>/caffe/distribute/python:$PYTHONPATH"

Error : (on the python-command-prompt after using 'import caffe')
It is unable to find the _caffe.so file in the caffe directory however I have manually checked that this file is present in the directory.

Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/Users/Home/research/virginia/CloudCV/caffe/distribute/python/caffe/__init__.py", line 1, in <module>
    from .pycaffe import Net, SGDSolver
  File "/Users/Home/research/virginia/CloudCV/caffe/distribute/python/caffe/pycaffe.py", line 13, in <module>
    from ._caffe import Net, SGDSolver
ImportError: dlopen(/Users/Home/research/virginia/CloudCV/caffe/distribute/python/caffe/_caffe.so, 2): Library not loaded: @rpath/libcaffe.so
  Referenced from: /Users/Home/research/virginia/CloudCV/caffe/distribute/python/caffe/_caffe.so
  Reason: image not found

Soln-3:

I've also read about people facing the issue of python libraries shared with skimage.io being referenced from the system version rather 
than the one specified in the caffe install. So I simply used this to avoid unnecessary trouble. (error-log at the end might be an insight)

pip install scikit-image

Soln-4 :

I might not be on the same issue as the Solution by @gp335 in the thread as I don't see any "/System/Library/Frameworks/Python.framework/Versions/2.7/Python" calls being made in my error-log. To be precise, here it is....
(error-log on using /caffe/python in PYTHONPATH)

Process:               Python [761]
Path:                  /usr/local/Cellar/python/2.7.9/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python
Identifier:            Python
Version:               2.7.9 (2.7.9)
Code Type:             X86-64 (Native)
Parent Process:        bash [710]
Responsible:           iTerm [635]
User ID:               501

Date/Time:             2015-05-28 00:28:36.361 +0530
OS Version:            Mac OS X 10.10.3 (14D136)
Report Version:        11
Anonymous UUID:        4D1E2216-6A20-E2AC-00A1-758B0B4AF821

Sleep/Wake UUID:       5F600EBD-9CB0-4BD5-A304-C45F57351EEE

Time Awake Since Boot: 18000 seconds
Time Since Wake:       6800 seconds

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_ACCESS (SIGSEGV)
Exception Codes:       KERN_INVALID_ADDRESS at 0x0000000000000000

VM Regions Near 0:
--> 
    __TEXT                 0000000106592000-0000000106594000 [    8K] r-x/rwx SM=COW  /usr/local/Cellar/python/2.7.9/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0   ???                             000000000000000000 0 + 0
1   org.python.python               0x00000001080770dd PyEval_GetGlobals + 23
2   org.python.python               0x000000010808662b PyImport_Import + 137
3   org.python.python               0x0000000108084d27 PyImport_ImportModule + 31
4   _caffe.so                       0x00000001072edcf8 caffe::init_module__caffe() + 4328
5   libboost_python.dylib           0x0000000107f98391 boost::python::handle_exception_impl(boost::function0<void>) + 81
6   libboost_python.dylib           0x0000000107f993b9 boost::python::detail::init_module(char const*, void (*)()) + 121
7   org.python.python               0x00000001066332cf _PyImport_LoadDynamicModule + 140
8   org.python.python               0x0000000106632fb7 import_submodule + 270
9   org.python.python               0x0000000106632b81 load_next + 280
10  org.python.python               0x0000000106630d89 PyImport_ImportModuleLevel + 1135
11  org.python.python               0x00000001066163db builtin___import__ + 135
12  org.python.python               0x00000001065a10ea PyObject_Call + 99
13  org.python.python               0x0000000106620d8b PyEval_CallObjectWithKeywords + 93
14  org.python.python               0x000000010661d065 PyEval_EvalFrameEx + 8375
15  org.python.python               0x000000010661ad7a PyEval_EvalCodeEx + 1409
16  org.python.python               0x000000010661a7f3 PyEval_EvalCode + 54
17  org.python.python               0x000000010662f836 PyImport_ExecCodeModuleEx + 241
18  org.python.python               0x0000000106632516 load_source_module + 1091
19  org.python.python               0x0000000106632fb7 import_submodule + 270
20  org.python.python               0x0000000106632b81 load_next + 280
21  org.python.python               0x0000000106630d89 PyImport_ImportModuleLevel + 1135
22  org.python.python               0x00000001066163db builtin___import__ + 135
23  org.python.python               0x00000001065a10ea PyObject_Call + 99
24  org.python.python               0x0000000106620d8b PyEval_CallObjectWithKeywords + 93
25  org.python.python               0x000000010661d065 PyEval_EvalFrameEx + 8375
26  org.python.python               0x000000010661ad7a PyEval_EvalCodeEx + 1409
27  org.python.python               0x000000010661a7f3 PyEval_EvalCode + 54
28  org.python.python               0x000000010662f836 PyImport_ExecCodeModuleEx + 241
29  org.python.python               0x0000000106632516 load_source_module + 1091
30  org.python.python               0x00000001066327d7 load_package + 303
31  org.python.python               0x0000000106632fb7 import_submodule + 270
32  org.python.python               0x0000000106632b81 load_next + 280
33  org.python.python               0x0000000106630d89 PyImport_ImportModuleLevel + 1135
34  org.python.python               0x00000001066163db builtin___import__ + 135
35  org.python.python               0x00000001065a10ea PyObject_Call + 99
36  org.python.python               0x0000000106620d8b PyEval_CallObjectWithKeywords + 93
37  org.python.python               0x000000010661d065 PyEval_EvalFrameEx + 8375
38  org.python.python               0x000000010661ad7a PyEval_EvalCodeEx + 1409
39  org.python.python               0x000000010661a7f3 PyEval_EvalCode + 54
40  org.python.python               0x000000010663a8a2 run_mod + 53
41  org.python.python               0x000000010663a6be PyRun_InteractiveOneFlags + 353
42  org.python.python               0x000000010663a1cd PyRun_InteractiveLoopFlags + 192
43  org.python.python               0x000000010663a077 PyRun_AnyFileExFlags + 60
44  org.python.python               0x000000010664bc5b Py_Main + 3051
45  libdyld.dylib                   0x00007fff98d525c9 start + 1

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x00000001081252d8  rbx: 0x0000000108406030  rcx: 0x0800bf453c5d2274  rdx: 0x0000000108409050
  rdi: 0x0000000000000000  rsi: 0x00000001080b90d7  rbp: 0x00007fff5966c050  rsp: 0x00007fff5966c048
   r8: 0x2000000000000200   r9: 0x0800000000000100  r10: 0x0000000004001049  r11: 0x000000000034dfe4
  r12: 0x0000000108406030  r13: 0x0000000000000000  r14: 0x0000000000000000  r15: 0x0000000000000000
  rip: 0x0000000000000000  rfl: 0x0000000000010206  cr2: 0x0000000000000000

Logical CPU:     2
Error Code:      0x00000014
Trap Number:     14


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Any inputs would be of great value.

Thanks! :)

Carlos Treviño

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May 28, 2015, 7:56:19 AM5/28/15
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Hi,

hope it helps:

https://haduonght.wordpress.com/2015/02/21/install-caffe-on-mac-os-x-10-10/

http://hoondy.com/2015/04/03/how-to-install-caffe-on-mac-os-x-10-10-for-dummies-like-me/

Anyway i also got problems trying to import caffe
 
Fatal Python error: PyThreadState_Get: no current thread

Mohit Jain

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May 28, 2015, 8:02:35 AM5/28/15
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Hello Carlos,
    Thank you for the links. Sadly, I've already tried these out. Actually my Caffe installation and compilation were flawless, its the final PYTHONPATH variable setting and the running environment thats giving the errors (to the best of my knowledge). Any ideas on these fronts?

-Mohit
...

Mohit Jain

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May 30, 2015, 4:36:09 PM5/30/15
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The problem was in different versions of python on my system and the brewed python. The dependencies would be installed with the brewed python while the interpreter would still call the system python and hence the errors. I've fixed the error by setting my PYTHON_LIB variable in the Makefile.config to the following. 

PYTHON_LIB := /usr/local/Cellar/python/2.7.9/Frameworks/Python.framework/Versions/2.7/lib/

I've also written a small Wiki compiling all the problem I faced and their respective solutions to help others through the same situation. http://installing-caffe-the-right-way.wikidot.com/ . Hope this is of some help :)

-Mohit
...

Carlos Treviño

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Jun 1, 2015, 6:56:43 AM6/1/15
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Hi Mohit,

Thanks for your contribution, I guess that was my problem too. I also found that is possible to use cmake to make things easier due the GUI.
Anyway, have you tried to create a lmdb file from a set of images? Even with caffe running and doing some tutorials, i found a problem with the create_imagenet.sh file.

-Carlos
...

Carlos Treviño

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Jun 1, 2015, 7:23:42 AM6/1/15
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There is also a PR in github explaining how to solve the Python issue:

https://github.com/BVLC/caffe/issues/591

Hope it helps!
-Carlos
...
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