BUCKy version check failed, update to version >= 1.4.4.

[Rachel Keuler]

I am trying to run bucky.pl in TICR, but I got the following message:

Unknown option: version

And then later:

BUCKy version check failed, update to version >= 1.4.4.

But that's the version I downloaded and am using. I'm also getting this error, which I'm not sure is related or not:

Argument ">=" isn't numeric in numeric gt (>) at /zhome/rakeuler/Xantho/PhyloNetwork/bucky line 1454.

Thank you,

Rachel

[Cécile Ané]

I can't reproduce the error, so I'm not sure how to help directly. But I highly suggest that you use the pipeline that uses a job scheduler. The scripts and the pipeline description are for slurm, but the submission scripts should be easily adapted to other job schedulers. A big advantage of the pipeline that uses a job scheduler is how it handles missing data, in case some sequences are missing for some loci. For a given set of 4 taxa, the BUCKy analysis on these 4 taxa uses all the loci that have data for these 4 taxa, even if those loci may lack the sequences for some other taxa.

If some loci are missing a few taxa, those loci would be excluded entirely in the pipeline that does not need a scheduler.

Cecile.