bsmap

I am trying to use methdiff.py (two groups comparison of three samples each group) but it gives me an

Yes, BSMAP support gzipped fastq input On Monday, March 12, 2012 9:40:14 AM UTC-5, sergi wrote: Hi

Hi, I would like to use methylKit on the output from BSMAP to determine differentially methylated

Hi, I've started using BSMAP and am looking forward to the output. There is information on the

Hi, We are trying out bsmap and have noticed that the "not primary alignment" flag is set

Hi Alan, Thanks for the feedback. bsmap should work with concatenated human .fa files, I always do it

We have been running BS-MAP directly with Illumina input files ("-z @" mode), which contain

I am using BSMAP for the first time, and I am wondering about the BAM flags 0x0040 and 0x0080. The

Hi I have to say "thanks" to you first. I'm trying to analyze my data using BSMAP. I

Hi, I ran the following commands on methratio.py: python methratio.py s_7_results.bsp s_7_methratio.

Hi, Are there any known issues with running BSMap on Mac? The readme says that it is designed for

Hi, I'm trying out BSMAP on a single lane using this command line: bsmap-1.02/bsmap -a s_8.fastq

Hi Magpie, Here is an example command line for single end reads: bsmap -a reads.fa -d ref.fa -o

Hi Magpie, Thanks for your interests in BSMAP. The output format is described in the README *********

Yes this forum is alive. Wei Sent from my iPhone On Sep 17, 2009, at 7:53 AM, Michael Farnbach <