error while using RHIPE with R-2.15

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sandy

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May 18, 2012, 1:04:09 AM5/18/12
to Bangalore R Users - BRU, bhupathi...@tcs.com, ab.seet...@tcs.com
Hi All,

I am updated my R from R-2.13 to R-2.15 and i install protobuf and
RHIPE packages for R and tryed my old R script which is wotking with
R-2.13, and it is throwing error new.

ERROR MESSAGE:-

Loading required package: methods
--------------------------------------------------------
| IMPORTANT: Before using Rhipe call rhinit() |
| Rhipe will not work or most probably crash |
--------------------------------------------------------
/hadoop-0.20.2/bin/hadoop jar /usr/local/lib/R/library/Rhipe/java/
Rhipe.jar org.godhuli.rhipe.PersonalServer localhost /tmp/RtmpFaeQy4/
sockets3436664fc01b /tmp/RtmpFaeQy4/signal3436554378af 0
Rhipe initialization complete
Rhipe first run complete
[1] TRUE
----------------------------------------
Running: /hadoop-0.20.2/bin/hadoop jar /usr/local/lib/R/library/
Rhipe/
java/Rhipe.jar org.godhuli.rhipe.RHMR /tmp/RtmpFaeQy4/
rhipe34365c91b0f2
----------------------------------------
/corelationout/
12/05/18 10:25:19 INFO input.FileInputFormat: Total input paths to
process : 1
12/05/18 10:25:25 INFO rhipe.RHMR: Tracking URL ---->
http://01HW044544:50030/jobdetails.jsp?jobid=job_201205171252_0008
12/05/18 10:25:25 INFO mapred.JobClient: Running job:
job_201205171252_0008
12/05/18 10:25:26 INFO mapred.JobClient: map 0% reduce 0%
12/05/18 10:27:20 INFO mapred.JobClient: map 100% reduce 0%
12/05/18 10:27:44 INFO mapred.JobClient: Task Id :
attempt_201205171252_0008_m_000000_0, Status : FAILED
attempt_201205171252_0008_m_000000_0: mapred.input.file ==
hdfs://01HW044544:9000/corelationinput/corinput.csv
12/05/18 10:27:53 INFO mapred.JobClient: map 0% reduce 0%
12/05/18 10:28:14 INFO mapred.JobClient: map 100% reduce 0%
12/05/18 10:28:22 INFO mapred.JobClient: Task Id :
attempt_201205171252_0008_m_000000_1, Status : FAILED
java.io.IOException: MROutput/MRErrThread
failed:java.lang.IndexOutOfBoundsException
at java.io.DataInputStream.readFully(DataInputStream.java:175)
at
org.godhuli.rhipe.RHBytesWritable.readFields(RHBytesWritable.java:91)
at org.godhuli.rhipe.RHMRHelper
$MROutputThread.readRecord(RHMRHelper.java:307)
at org.godhuli.rhipe.RHMRHelper
$MROutputThread.run(RHMRHelper.java:329)

at
org.godhuli.rhipe.RHMRHelper.checkOuterrThreadsThrowable(RHMRHelper.java:
236)
at org.godhuli.rhipe.RHMRMapper.run(RHMRMapper.java:67)
at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:
621)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:305)
at org.apache.hadoop.mapred.Child.main(Child.java:170)

attempt_201205171252_0008_m_000000_1: mapred.input.file ==
hdfs://01HW044544:9000/corelationinput/corinput.csv
12/05/18 10:28:23 INFO mapred.JobClient: map 0% reduce 0%
12/05/18 10:28:32 INFO mapred.JobClient: map 100% reduce 0%

Please help me in fixing this error.

Thanks
Sandeep
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