RBrownie for species delimitation: install issues

[Sergio Marques de Souza]

Hello,

I am a new user and want to try Brownie for species delimitation using a windows. I am not sure if Rbrownie could be used for species delimitation (apparently not). Anyway, I have downloaded RBrownie_0.0.9.tar.gz from Google Code site, but I cannot install the package. Here is the error message:

* installing *source* package 'RBrownie' ...

Warning: running command 'sh ./configure.win' had status 127

ERROR: configuration failed for package 'RBrownie'

* removing 'C:/Users/Sergio/Documents/R/win-library/3.1/RBrownie'

Warning in install.packages :

  running command '"C:/PROGRA~1/R/R-31~1.2/bin/x64/R" CMD INSTALL -l "C:\Users\Sergio\Documents\R\win-library\3.1" "C:/Users/Sergio/Downloads/RBrownie_0.0.9.tar.gz"' had status 1

Warning in install.packages :

  installation of package ‘C:/Users/Sergio/Downloads/RBrownie_0.0.9.tar.gz’ had non-zero exit status

I have already tried to download the .exe file (as the manual said), but I did not found it on google code. 

I am missing something obvious here? Sorry for the basic question...I am just entering in the world oh bioinformatics. Any suggestion is highly appreciated!

Best,

Sergio

[Brian O'Meara]

Dear Sergio,

RBrownie does not have species delimitation. The C++ version of Brownie does: with the closure of Google Code, it has been moved to Github: https://github.com/bomeara/brownie . However, you'd have to download it and compile it yourself on windows to do this. 

Best,

Brian

_______________________________________
Brian O'Meara
Associate Professor
Dept. of Ecology & Evolutionary Biology
U. of Tennessee, Knoxville
http://www.brianomeara.info

Postdoc collaborators wanted: http://nimbios.org/postdocs/
Calendar: http://www.brianomeara.info/calendars/omeara

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