Re: [Obi-devel] bro usage

[Trish Whetzel]

Thanks, I've been interested to write some code to analyze the diversity of annotations across resources. Can you send a pointer to your code or tool?

Trish

On Tue, Mar 23, 2010 at 11:50 AM, Alan Ruttenberg <alanrut...@gmail.com> wrote:

I went though the existing biositemaps files listed at
http://biositemaps.ncbcs.org/biositemap.registry and counted overall
use of BRO terms.
For your information...

Resource: 215
Cell_Biology_Facility: 81
Imaging_Facility: 53
Animal_Models_Facility: 50
Microscopy_Facility: 39
Physiology_Facility: 33
Facility_Core: 31
Data_Computation_Service: 30
Information_Resource: 27
Software: 27
Training_Resource: 26
Instrument: 21
Pathology_Laboratory_Screening: 20
People_Resource: 20
Mass_Spectrometer: 20
Natural_Language_Processing: 19
Service_Resource: 18
Information_Retrieval: 18
Interactive_Web-Based_Tool: 17
Metabolism_Facility: 16
Database: 16
Data_Acquisition_Software: 15
Tissue_Organ_Facility: 15
Modeling_and_Simulation: 15
Neuromuscular_Model: 10
Molecular_Dynamics: 10
Material_Service: 10
Material_Resource: 10
Shape_Analysis: 10
Computational_Model: 10
Relational_Database: 9
Manifold_Viewers: 9
Knowledgebase: 9
Ontology_Development_and_Management: 8
Website: 8
Sequence_Annotation: 7
Communication_and_Collaborative_Work: 7
RNA_Model: 7
Data_Analysis_Software: 7
Image_Processing: 6
Data_Storage_Repository: 6
Searching_Sorting_and_Indexing: 6
Protein_Model: 6
Molecular_Model: 6
Toolkit: 6
Instrument_Manufacture: 6
Dissemination_Vehicle: 6
Software_Documentation: 6
Statistical_Package: 5
Source_Code: 5
Mechanical_Simulation: 5
Molecular_Visualization: 5
Network_Characterization: 5
Data_Resource: 5
Experimental_Measurement: 5
Regulatory_Signaling_Network_Reconstruction: 5
Interaction_Modeling: 5
Education: 5
Segmentation: 5
Software_Distribution: 5
Knowledge_Mining_and_Capturing: 5
Data_Mining_and_Inference: 4
Interaction_Network: 4
Clinical_Data: 4
Data_Storage_Service: 4
Homology_Modeling: 4
Data_Visualization: 4
Cardiovascular_Model: 4
Genomic_Phenotypic_Analysis: 4
Data_Processing_Software: 4
Biomaterial_Supply_Resource: 3
Pattern_and_Motif_Inference: 3
Finite_Element_Model: 3
Data_Repository: 3
Material_Storage_Service: 3
Interactive_Tool: 3
Network_Model: 3
Mass_Spectra_Identification: 3
Laboratory_Supply_Resource: 3
Web_Service: 3
Registration: 3
Integration_and_Interoperability_Tool: 3
Contact_Modeling: 2
Data_Storage: 2
Physioloigcal_Model: 2
Proteomics_Facility: 2
Biobank_Facility: 2
Knowledge_Environment: 2
Structure-Based_Protein_Classification: 2
Protocol_Development_Expertise: 2
Integrated_Hosting: 2
Authorization: 2
Knowledge_Extraction: 2
Database_Hosting: 2
Authentication: 2
Data_Transforms: 2
Atlas_Generation: 2
Graph_Viewers: 2
Flatfile_Distribution: 2
Feature_Analysis: 2
Multibody_Dynamics: 2
Ontology_Visualization: 2
Standalone_Application: 2
Prediction_of_Side-Chain_Conformations: 2
Molecular_Interaction: 2
Statistical_Algorithm: 2
Industry_Partnership_Expertise: 2
Data_Service: 2
Structured_Knowledge_Resource: 2
Sequence_Similarity_Searching: 2
Support: 2
Numerical_Model: 2
Linear_Algebra_Tool: 2
Ontology: 2
Statistical_Analysis: 2
Structural_Model: 2
Protein_Interaction_Modeling: 2
Molecular_Force_Field_Calculator: 2
Free_Text: 2
Biomaterial_Analysis_Service: 2
Graph_Analysis: 2
Molecular_Modeling_and_Classification: 2
Algorithm: 2
Signaling_Network_Reconstruction: 2
Backup_Archives_and_Disaster_Recovery: 2
Grid_Computing: 2
Continuum_Method_Simulation: 1
Paper: 1
Molecular_Trajectory_Data: 1
Modular_Component: 1
Data_Distribution: 1
Calculation_of_Solvent_Accessible_Area: 1
Three_Dimensional_Data: 1
Monte_Carlo_Simulation: 1
Application_Programming_Interface: 1
Image_Algorithm: 1
Funding_Resource: 1
Grant_Preparation_Expertise: 1
Fourier_Transform: 1
Calendar_Schedule_and_Resource_Management: 1
Numerical_Method: 1
Phenotypic_Measurement: 1
Graphical_Integration: 1
Cortical_Modeling: 1
Programmatic_Access: 1
Gene_Expression: 1
Sequence_Visualization: 1
Numerical_Integrator: 1
Computational_Service: 1
Document_Retrieval: 1
Model_Fitting_Algorithm: 1
Biosafety_Level_Facility: 1
Communication_Interface: 1
Workbench: 1
Protein-Protein_Interaction: 1
Imaging: 1
Pipeline_Manager: 1
Network_Interaction_Model: 1
Inference_From_Data: 1
Narrative_Resource: 1
Data_Editor: 1
Cell_Model: 1
Personal_Communication: 1
Clinical_Charts: 1
Phenotype_Management: 1
Wavelet_Transform: 1
Mesh_Model: 1
Computational_Hosting: 1
Private_Funding_Resource: 1
Reagent_Resource: 1
Structured_Data: 1
Optimizer: 1
Integration_and_Interoperability_Tools: 1
Visualization: 1
Data_Normalization: 1
Research_Animals_Facility: 1
Data_Exploration: 1
Federal_Funding_Resource: 1
Numerical_Calculation_of_Electrostatic_Potential: 1
Tutorials: 1

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[Alan Ruttenberg]

https://obi.svn.sourceforge.net/svnroot/obi/trunk/src/tools/bro-analyze.lisp