Think you answered your own question Tony.
I have started to re-rip some of my music collection to FLAC also. Most of my music had been ripped to mp3 on my PC for easy copying to mobile devices etc. I started transferring it to the B2 initially by the B2 upload facility and later using NAS. Now that I have all of my music on the B2 I have started to replace some with better quality FLAC. I do this by ripping to FLAC on the PC where I do any re-editing. Once ripped and happy with any edits, I add in brackets (FLAC) to the end of the Album title so once transferred to the B2 I know at a glance on the UI what has been done and what's still to do, if I still have the CDs. Then I use File Explorer on my laptop to view the B2 drive and the music folder on my laptop's C: drive (where the new FLAC albums have been ripped) together side by side. I find the album I want to replace on the B2 drive. Check it's definitely the one I want to replace, then delete it. Next I drag and drop the new FLAC labelled album into it's Artist folder and watch it transfer. I do a few at a time. Once a batch is complete I return to the B2 UI and run Scan Disk to restructure the B2 library with the new FLAC albums. Then I search the Artist and check the new FLAC albums are there ok. This avoids duplicating and any FLAC albums can be seen easily. See attached. B2 drive is circled, Mapped as drive Z: