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Danella Hafeman, Chris Watson7

4/2/21

After you get the "MARGIN does not match dim(X)" error, what is the output of `traceback()`

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After you get the "MARGIN does not match dim(X)" error, what is the output of `traceback()`

4/2/21

Virva Saunavaara, Chris Watson12

2/3/21

problems with g, GC.wt and PC.wt.

Sorry for the delay. I have just pushed the fix to GitHub so you can update the package and it should

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problems with g, GC.wt and PC.wt.

Sorry for the delay. I have just pushed the fix to GitHub so you can update the package and it should

2/3/21

Brian Kim, Chris Watson8

12/15/20

Computing small.world coefficient

Thanks Chris, The code works great! Yes, I'll consider running the code directly from the

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Computing small.world coefficient

Thanks Chris, The code works great! Yes, I'll consider running the code directly from the

12/15/20

Brian Kim, Chris Watson7

11/19/20

plot_brainGraph_gui() cannot change value of locked binding for 'graphObj'

There's the same issue. I am not using quotation marks. I've noticed this stackoverflow post

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plot_brainGraph_gui() cannot change value of locked binding for 'graphObj'

There's the same issue. I am not using quotation marks. I've noticed this stackoverflow post

11/19/20

jrusse...@gmail.com, … Chris Watson7

10/23/20

MTPC Error in v3.0.0

I've looked at your data. Across thresholds, there is essentially no difference among the graphs.

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MTPC Error in v3.0.0

I've looked at your data. Across thresholds, there is essentially no difference among the graphs.

10/23/20

Gershon Spitz, Chris Watson9

10/1/20

brainGraph v3.0 custom parcellation pipeline

Thanks Chris! Best, On 2 Oct 2020, at 1:58 am, Chris Watson <cwa...@alum.mit.edu> wrote: RE the

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brainGraph v3.0 custom parcellation pipeline

Thanks Chris! Best, On 2 Oct 2020, at 1:58 am, Chris Watson <cwa...@alum.mit.edu> wrote: RE the

10/1/20

maria, … Chris Watson15

2/7/20

contrast matrix in mtpc

Perfect, thank you! On Friday, February 7, 2020 at 4:49:39 PM UTC-5, Chris Watson wrote: 1. Yes, the

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contrast matrix in mtpc

Perfect, thank you! On Friday, February 7, 2020 at 4:49:39 PM UTC-5, Chris Watson wrote: 1. Yes, the

2/7/20

Jef Vlegels, Chris Watson5

12/24/19

rich core - weighted network

Hi Chris, This seems to be my first Christmas present of this year, it's indeed fixed by changing

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rich core - weighted network

Hi Chris, This seems to be my first Christmas present of this year, it's indeed fixed by changing

12/24/19

10/21/19

Error: package or namespace load failed for ‘brainGraph’: object ‘summary.mediate’ is not exported by 'namespace:mediation'

The package was updated yesterday to remove this requirement and now it works fine. So, my suggestion

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Error: package or namespace load failed for ‘brainGraph’: object ‘summary.mediate’ is not exported by 'namespace:mediation'

The package was updated yesterday to remove this requirement and now it works fine. So, my suggestion

10/21/19

Dion, … Chris Watson4

8/29/19

Error when exclude regions?

Thanks Philipp. That is indeed an approach that should work without issue. In the next version it

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Error when exclude regions?

Thanks Philipp. That is indeed an approach that should work without issue. In the next version it

8/29/19

Philipp Riedel, … Chris Watson15

7/20/19

Use of Covariance Matrices from R

Hi Philipp, Thanks for reporting back, and for bringing that thread up. I meant to add that feature

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Use of Covariance Matrices from R

Hi Philipp, Thanks for reporting back, and for bringing that thread up. I meant to add that feature

7/20/19

Daniel J. King, Chris Watson6

6/26/19

Density=1, unthresholded networks

Hi Dan, I don't recall any other reports of that error. I also have not seen in my own data.

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Density=1, unthresholded networks

Hi Dan, I don't recall any other reports of that error. I also have not seen in my own data.

6/26/19

yd li, Chris Watson5

6/12/19

set_brainGraph_attr

I discovered the issue. Your graph "g.tmp" is a fully connected graph; ie, it's density

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set_brainGraph_attr

I discovered the issue. Your graph "g.tmp" is a fully connected graph; ie, it's density

6/12/19

3/25/19

brainGraph_permute issue with custom Atlas

Hi, thanks for developing this great R package! I have an issue running the script "

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brainGraph_permute issue with custom Atlas

Hi, thanks for developing this great R package! I have an issue running the script "

3/25/19

Chia-Hao Shih, Chris Watson3

3/6/19

Robustness function

Hi Chris, Thanks for the prompt response. I will try to figure this out and update my situation later

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Robustness function

Hi Chris, Thanks for the prompt response. I will try to figure this out and update my situation later

3/6/19

Lucia, Chris Watson2

10/25/18

Problem with 15.2.1 Other plotting/Adjacency matrix plots

Yes, it's possible that there aren't enough colors applied by the function. This was just a

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feature_request

Problem with 15.2.1 Other plotting/Adjacency matrix plots

Yes, it's possible that there aren't enough colors applied by the function. This was just a

10/25/18

Daniel J. King, Chris Watson2

10/17/18

brainGraph_permute function error

If you send me the data required to recreate the bug, I will take a look. You may send it off-list if

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brainGraph_permute function error

If you send me the data required to recreate the bug, I will take a look. You may send it off-list if

10/17/18

Jaiashre Sridhar, … Chris Watson9

7/12/18

For "set_brainGraph_attr", there probably isn't an easy way aside from either running

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For "set_brainGraph_attr", there probably isn't an easy way aside from either running

7/12/18

özgün özalay, Chris Watson9

6/7/18

Error: ncol(X) == ncol(con.mat) is not TRUE

Hi Ozgun, "g.glm" was just used as an example input. It is a "flat" list object

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Error: ncol(X) == ncol(con.mat) is not TRUE

Hi Ozgun, "g.glm" was just used as an example input. It is a "flat" list object

6/7/18

Sean Ma, Chris Watson11

6/13/18

Plotting brainGraph object in a grid format

Will let you know if works! Thanks so much again! Sean On Wednesday, June 13, 2018 at 5:06:17 PM UTC-

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Plotting brainGraph object in a grid format

Will let you know if works! Thanks so much again! Sean On Wednesday, June 13, 2018 at 5:06:17 PM UTC-

6/13/18

Sean Ma, Chris Watson4

1/22/18

Adjacency matrix - does it need to be all positive values

1) Thanks, I will look into that. I think I'll just end up writing a solution that will allow you

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Adjacency matrix - does it need to be all positive values

1) Thanks, I will look into that. I think I'll just end up writing a solution that will allow you

1/22/18

B Drury, Chris Watson8

3/8/17

Testing an empirical brain network for rich club characteristics

Hi Chris, Thank you very much for your suggestions. Using simplify() as you suggested does eliminate

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Testing an empirical brain network for rich club characteristics

Hi Chris, Thank you very much for your suggestions. Using simplify() as you suggested does eliminate

3/8/17

özgün özalay, … Chris Watson6

12/29/16

Permutation analysis error [Graph Level]

Hi Chris; Finally we had a chance to try your suggestion after a long break. As you said it works

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Permutation analysis error [Graph Level]

Hi Chris; Finally we had a chance to try your suggestion after a long break. As you said it works

12/29/16

Chris Watson, … Chris Watson12

10/4/16

Re: [brainGraph-help] plot_brainGraph_gui documentation

I'm glad to hear it is working, and am just as confused as your are! On Tue, Oct 4, 2016 at 1:53

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Re: [brainGraph-help] plot_brainGraph_gui documentation

I'm glad to hear it is working, and am just as confused as your are! On Tue, Oct 4, 2016 at 1:53

10/4/16

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