brainGraph_permute function error

[Daniel J. King]

Hi Chris,

I have a slight issue with the brainGraph_permute function which seems to be putting out a weird error, essentially saying it it is outputting a longer set of regions than intended? (The custom atlas has 308 regions).

myPerms <- permute::shuffleSet(n=nrow(all.dat.resids$resids.all), nset=kNumPerms)

perms.btwn <- brainGraph_permute(median.density, all.dat.resids, perms=myPerms, level='vertex')

Error in setnames(res.perm, 2:ncol(res.perm), regions) : 

  'old' is length 309 but 'new' is length 308

I am running R version 3.5.0 (2018-04-23) and BrainGraph version 2.2.0.

Any help or advice would be greatly received!

BW

Danz

[Chris Watson]

If you send me the data required to recreate the bug, I will take a look. You may send it off-list if you prefer.

Chris

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