Multiple pipeline calls

[Rohit Sharma]

Hi,

I have 4 different pipelines working on R1 and R2 samples. I want to create a 5th Pipeline which will be master of these 4 pipelines.So, on the basis of the logic defined in Pipeline different combinations will execute of these pipelines. 

Is that possible to execute multiple pipelines from one pipeline

[Simon Sadedin]

Unfortunately there isn't any special support right now to launch off a sub-pipeline yet. It's something that I've thought about, but never got around to.

You can however readily run bpipe itself from inside bpipe - you should use more recent versions which will return exit code 1 if the pipeline fails, so you can rely on the master to fail if one of the children fails. 

Cheers,

Simon

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[Rohit Sharma]

Thanks that helped me a lot to fix the problem

On Wednesday, November 8, 2017 at 6:31:24 AM UTC-5, Simon wrote:

Unfortunately there isn't any special support right now to launch off a sub-pipeline yet. It's something that I've thought about, but never got around to.

You can however readily run bpipe itself from inside bpipe - you should use more recent versions which will return exit code 1 if the pipeline fails, so you can rely on the master to fail if one of the children fails. 

Cheers,

Simon

On Wed, Nov 8, 2017 at 6:56 AM, Rohit Sharma via bpipe-discuss <bpipe-discuss+APn2wQcy85ckhFxW8tlHxGu2lGGUrYDgQChvYRM2vpS4LOOGEI@googlegroups.com> wrote:

Hi,

I have 4 different pipelines working on R1 and R2 samples. I want to create a 5th Pipeline which will be master of these 4 pipelines.So, on the basis of the logic defined in Pipeline different combinations will execute of these pipelines. 

Is that possible to execute multiple pipelines from one pipeline

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