Cannot cast object 'LB:[annotate]' with class 'bpipe.ListBouncer' to class 'groovy.lang.Closure'

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Etienne Mahe

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May 15, 2017, 6:17:51 PM5/15/17
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Dear Group,

I am trying to run a bpipe pipeline, but am receiving the following error:

An error occurred executing your pipeline:

Cannot cast object 'LB:[annotate]' with class 'bpipe.ListBouncer' to class 'groovy.lang.Closure'


Please see the details below for more information.

========================================== Error Details ===========================================

org.codehaus.groovy.runtime.typehandling.GroovyCastException: Cannot cast object 'LB:[annotate]' with class 'bpipe.ListBouncer' to class 'groovy.lang.Closure'
at bpipe.DefinePipelineCategory$_multiply_closure3.doCall(DefinePipelineCategory.groovy:173)
at bpipe.DefinePipelineCategory$_multiply_closure3.doCall(DefinePipelineCategory.groovy:177)
at bpipe.DefinePipelineCategory$_plus_closure2.doCall(DefinePipelineCategory.groovy:122)
at bpipe.DefinePipelineCategory$_multiply_closure3.doCall(DefinePipelineCategory.groovy:177)
at bpipe.Pipeline$_diagram_closure18_closure31.doCall(Pipeline.groovy:1032)
at bpipe.Pipeline$_diagram_closure18.doCall(Pipeline.groovy:1030)
at bpipe.Pipeline$_diagram_closure18.doCall(Pipeline.groovy)
at bpipe.Pipeline.diagram(Pipeline.groovy:1028)
at bpipe.Pipeline$diagram$4.callCurrent(Unknown Source)
at bpipe.Pipeline.execute(Pipeline.groovy:618)
at bpipe.Pipeline.execute(Pipeline.groovy)
at bpipe.Pipeline.this$2$execute(Pipeline.groovy)
at bpipe.Pipeline$this$2$execute$2.call(Unknown Source)
at bpipe.Pipeline.run(Pipeline.groovy:475)
at bpipe.Pipeline$run$0.callStatic(Unknown Source)
at bpipe.Pipeline.run(Pipeline.groovy:435)
at myeloid.parameters.run(myeloid.parameters.groovy:21)
at myeloid.parameters$run.call(Unknown Source)
at bpipe.Runner.main(Runner.groovy:375)


Does anyone have any troubleshooting suggestions?

Thanks
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