The simple answer: If you have a 5V BEC, short 1&2, bypassing the LDO regulator. If you have a 5.5V-6V BEC, short 2&3.
Somewhat more complex answer: The ATtiny13A should run off of no more than 5.5V. If the BEC voltage is more than 5.5V it should be regulated down to 5V by shorting 2&3. If it's only 5V, you should short 1&2 so the BEC's 5V goes directly to the Tiny.
I'm testing whether it's possible to feed the regulator 5V. The dropout voltage is extremely low at the minimal current draw required by the ATtiny+'157 chips. But for now running in that mode is 'at your own risk'. :) I am investigating use of a 3.3V regulator instead which eliminates all these issues as well as the BEC selector jumper, but didn't want to change too much in Rev 0.3.